Multiple platform build/check report for BioC 3.23 - BUILD results for easier on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4508
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences"	3381
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for easier on kjohnson3

To the developers/maintainers of the easier package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/easier.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: easier

Version: 1.17.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data easier

StartedAt: 2026-03-08 15:37:55 -0400 (Sun, 08 Mar 2026)

EndedAt: 2026-03-08 15:39:10 -0400 (Sun, 08 Mar 2026)

EllapsedTime: 75.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data easier
###
##############################################################################
##############################################################################


* checking for file ‘easier/DESCRIPTION’ ... OK
* preparing ‘easier’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘easier_user_manual.Rmd’ using rmarkdown

Quitting from easier_user_manual.Rmd:260-263 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'viper'
---
Backtrace:
     ▆
  1. ├─easier::compute_TF_activity(RNA_tpm = RNA_tpm)
  2. │ └─decoupleR::run_viper(...)
  3. │   ├─... %>% mutate(p_value = 2 * stats::pnorm(-abs(score)))
  4. │   └─rlang::exec(...)
  5. ├─dplyr::mutate(., p_value = 2 * stats::pnorm(-abs(score)))
  6. ├─tibble::add_column(., statistic = "viper", .before = 1)
  7. │ └─base::is.data.frame(.data)
  8. ├─tidyr::pivot_longer(., -source, names_to = "condition", values_to = "score")
  9. ├─tibble::rownames_to_column(., "source")
 10. ├─base::as.data.frame(.)
 11. └─base::loadNamespace(x)
 12.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 13.     └─base (local) withOneRestart(expr, restarts[[1L]])
 14.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'easier_user_manual.Rmd' failed with diagnostics:
there is no package called 'viper'
--- failed re-building ‘easier_user_manual.Rmd’

SUMMARY: processing the following file failed:
  ‘easier_user_manual.Rmd’

Error: Vignette re-building failed.
Execution halted