| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-22 11:34 -0500 (Thu, 22 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4808 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4542 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 165/2345 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bedbaser 1.3.4 (landing page) Andres Wokaty
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the bedbaser package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bedbaser.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bedbaser |
| Version: 1.3.4 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bedbaser |
| StartedAt: 2026-01-21 16:27:57 -0500 (Wed, 21 Jan 2026) |
| EndedAt: 2026-01-21 16:28:17 -0500 (Wed, 21 Jan 2026) |
| EllapsedTime: 20.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bedbaser
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* checking for file ‘bedbaser/DESCRIPTION’ ... OK
* preparing ‘bedbaser’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘bedbaser.Rmd’ using rmarkdown
Quitting from bedbaser.Rmd:43-47 [bedbase]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Unknown http status code: 521
---
Backtrace:
▆
1. └─bedbaser::BEDbase(tempdir())
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. ├─bedbaser:::.BEDbase(...)
5. │ └─methods::new(`<chr>`, ...)
6. │ ├─methods::initialize(value, ...)
7. │ └─methods::initialize(value, ...)
8. └─AnVIL::Service(...)
9. └─AnVIL:::.service_get_api_file(api_reference_url, api_reference_headers)
10. └─AnVILBase::avstop_for_status(response, ".service_get_api_file")
11. └─httr::http_condition(status, "error")
12. └─httr::http_status(status)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bedbaser.Rmd' failed with diagnostics:
Unknown http status code: 521
--- failed re-building ‘bedbaser.Rmd’
SUMMARY: processing the following file failed:
‘bedbaser.Rmd’
Error: Vignette re-building failed.
Execution halted