Hervé Pagès
| Snapshot Date: 2026-03-06 13:40 -0500 (Fri, 06 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/UCSC.utils |
| git_branch: devel |
| git_last_commit: 54b281b |
| git_last_commit_date: 2025-12-08 20:19:59 -0500 (Mon, 08 Dec 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-07 11:34 -0500 (Sat, 07 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4453 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3376 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2285/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| UCSC.utils 1.7.1 (landing page) Hervé Pagès
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for UCSC.utils in R Universe. | ||||||||||||||
|
To the developers/maintainers of the UCSC.utils package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UCSC.utils.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: UCSC.utils |
| Version: 1.7.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils |
| StartedAt: 2026-03-06 16:40:45 -0500 (Fri, 06 Mar 2026) |
| EndedAt: 2026-03-06 16:40:49 -0500 (Fri, 06 Mar 2026) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils
###
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* checking for file ‘UCSC.utils/DESCRIPTION’ ... OK
* preparing ‘UCSC.utils’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘UCSC.utils.Rmd’ using rmarkdown
Quitting from UCSC.utils.Rmd:86-89 [UCSC_dbselect]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `S4Vectors:::load_package_gracefully()`:
! Could not load package RMariaDB. Is it installed?
Note that the RMariaDB package is required by UCSC_dbselect(). Please install
it with:
BiocManager::install("RMariaDB")
---
Backtrace:
▆
1. └─UCSC.utils::UCSC_dbselect("felCat9", "refGene")
2. └─S4Vectors:::load_package_gracefully("RMariaDB", "by UCSC_dbselect()")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UCSC.utils.Rmd' failed with diagnostics:
Could not load package RMariaDB. Is it installed?
Note that the RMariaDB package is required by UCSC_dbselect(). Please install
it with:
BiocManager::install("RMariaDB")
--- failed re-building ‘UCSC.utils.Rmd’
SUMMARY: processing the following file failed:
‘UCSC.utils.Rmd’
Error: Vignette re-building failed.
Execution halted