| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:33 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2194/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TDbasedUFEadv 1.11.0 (landing page) Y-h. Taguchi
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for TDbasedUFEadv in R Universe. | ||||||||||||||
|
To the developers/maintainers of the TDbasedUFEadv package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TDbasedUFEadv.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TDbasedUFEadv |
| Version: 1.11.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TDbasedUFEadv |
| StartedAt: 2026-03-08 20:29:44 -0400 (Sun, 08 Mar 2026) |
| EndedAt: 2026-03-08 20:31:26 -0400 (Sun, 08 Mar 2026) |
| EllapsedTime: 102.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TDbasedUFEadv
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* checking for file ‘TDbasedUFEadv/DESCRIPTION’ ... OK
* preparing ‘TDbasedUFEadv’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Enrichment.Rmd’ using rmarkdown
trying URL 'https://stringdb-downloads.org/download/protein.aliases.v11.5/9606.protein.aliases.v11.5.txt.gz'
Quitting from Enrichment.Rmd:120-133 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://stringdb-downloads.org/download/protein.aliases.v11.5/9606.protein.aliases.v11.5.txt.gz'
---
Backtrace:
▆
1. └─string_db$map(data.frame(genes = genes), "genes", removeUnmappedRows = TRUE)
2. └─STRINGdb (local) get_aliases(takeFirst)
3. └─STRINGdb::downloadAbsentFile(...)
4. └─utils::download.file(urlStr, temp)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Enrichment.Rmd' failed with diagnostics:
cannot open URL 'https://stringdb-downloads.org/download/protein.aliases.v11.5/9606.protein.aliases.v11.5.txt.gz'
--- failed re-building ‘Enrichment.Rmd’
--- re-building ‘Explanation_of_TDbasedUFEadv.Rmd’ using rmarkdown
--- finished re-building ‘Explanation_of_TDbasedUFEadv.Rmd’
--- re-building ‘How_to_use_TDbasedUFEadv.Rmd’ using rmarkdown
--- finished re-building ‘How_to_use_TDbasedUFEadv.Rmd’
SUMMARY: processing the following file failed:
‘Enrichment.Rmd’
Error: Vignette re-building failed.
Execution halted