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This page was generated on 2026-05-05 11:38 -0400 (Tue, 05 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4989
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4719
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2053/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIAMCAT 2.16.0  (landing page)
Jakob Wirbel
Snapshot Date: 2026-05-04 13:40 -0400 (Mon, 04 May 2026)
git_url: https://git.bioconductor.org/packages/SIAMCAT
git_branch: RELEASE_3_23
git_last_commit: d15d205
git_last_commit_date: 2026-04-28 08:48:00 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for SIAMCAT in R Universe.

BUILD results for SIAMCAT on kjohnson3

To the developers/maintainers of the SIAMCAT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SIAMCAT.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SIAMCAT
Version: 2.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT
StartedAt: 2026-05-04 17:46:01 -0400 (Mon, 04 May 2026)
EndedAt: 2026-05-04 17:49:13 -0400 (Mon, 04 May 2026)
EllapsedTime: 192.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT
###
##############################################################################
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* checking for file ‘SIAMCAT/DESCRIPTION’ ... OK
* preparing ‘SIAMCAT’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘SIAMCAT_confounder.Rmd’ using rmarkdown

Quitting from SIAMCAT_confounder.Rmd:159-179 [load_motus]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://zenodo.org/api/files/d81e429c-870f-44e0-a44a-2a4aa541b6c1/metaHIT_motus.tsv'
---
Backtrace:
    ▆
 1. └─utils::read.table(...)
 2.   └─base::file(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SIAMCAT_confounder.Rmd' failed with diagnostics:
cannot open the connection to 'https://zenodo.org/api/files/d81e429c-870f-44e0-a44a-2a4aa541b6c1/metaHIT_motus.tsv'
--- failed re-building ‘SIAMCAT_confounder.Rmd’

--- re-building ‘SIAMCAT_holdout.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_holdout.Rmd’

--- re-building ‘SIAMCAT_meta.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_meta.Rmd’

--- re-building ‘SIAMCAT_ml_pitfalls.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_ml_pitfalls.Rmd’

--- re-building ‘SIAMCAT_read-in.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_read-in.Rmd’

--- re-building ‘SIAMCAT_vignette.Rmd’ using rmarkdown
--- finished re-building ‘SIAMCAT_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘SIAMCAT_confounder.Rmd’

Error: Vignette re-building failed.
Execution halted