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This page was generated on 2026-05-01 11:36 -0400 (Fri, 01 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4988
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4718
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1776/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.48.0  (landing page)
Nan Xiao
Snapshot Date: 2026-04-30 13:40 -0400 (Thu, 30 Apr 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: RELEASE_3_23
git_last_commit: 7b08591
git_last_commit_date: 2026-04-28 08:38:50 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.48.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.48.0.tar.gz
StartedAt: 2026-04-30 21:28:20 -0400 (Thu, 30 Apr 2026)
EndedAt: 2026-04-30 21:29:10 -0400 (Thu, 30 Apr 2026)
EllapsedTime: 50.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.48.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-01 01:28:20 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.48.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.48.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.593   0.265   2.322 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE0.0000.0010.001
AAACF000
AABLOSUM1000.0000.0000.001
AABLOSUM450.0000.0000.001
AABLOSUM50000
AABLOSUM62000
AABLOSUM800.0000.0010.001
AABurden0.0010.0000.000
AACPSA000
AAConn0.0000.0010.001
AAConst000
AADescAll000
AAEdgeAdj0.0000.0000.001
AAEigIdx000
AAFGC0.0010.0010.000
AAGETAWAY0.0000.0000.001
AAGeom000
AAInfo0.0000.0010.000
AAMOE2D0.0010.0000.001
AAMOE3D000
AAMetaInfo000
AAMolProp0.0000.0000.001
AAPAM1200.0000.0010.000
AAPAM250000
AAPAM300.0000.0000.001
AAPAM400.0010.0010.000
AAPAM70000
AARDF0.0000.0000.001
AARandic000
AATopo0.0010.0000.000
AATopoChg0.0000.0010.001
AAWHIM000
AAWalk000
AAindex0.0000.0010.001
OptAA3d000
acc0.0400.0030.044
calcDrugFPSim0.0010.0000.000
calcDrugMCSSim0.0010.0010.002
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.003
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt000
convMolFormat0.0010.0010.000
extractDrugAIO000
extractDrugALOGP0.0000.0000.001
extractDrugAminoAcidCount0.0010.0000.000
extractDrugApol0.0000.0010.001
extractDrugAromaticAtomsCount000
extractDrugAromaticBondsCount0.0010.0000.001
extractDrugAtomCount000
extractDrugAutocorrelationCharge0.0000.0000.001
extractDrugAutocorrelationMass0.0010.0010.000
extractDrugAutocorrelationPolarizability0.0000.0000.001
extractDrugBCUT000
extractDrugBPol0.0000.0000.001
extractDrugBondCount000
extractDrugCPSA0.0000.0000.001
extractDrugCarbonTypes000
extractDrugChiChain0.0010.0000.001
extractDrugChiCluster000
extractDrugChiPath0.0000.0000.001
extractDrugChiPathCluster000
extractDrugDescOB0.0010.0010.003
extractDrugECI0.0010.0000.001
extractDrugEstate000
extractDrugEstateComplete000
extractDrugExtended0.0000.0010.000
extractDrugExtendedComplete000
extractDrugFMF000
extractDrugFragmentComplexity000
extractDrugGraph0.0010.0010.001
extractDrugGraphComplete000
extractDrugGravitationalIndex0.0000.0000.001
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount0.0000.0010.001
extractDrugHybridization000
extractDrugHybridizationComplete0.0000.0000.001
extractDrugHybridizationRatio0.0010.0000.000
extractDrugIPMolecularLearning000
extractDrugKR0.0000.0000.001
extractDrugKRComplete0.0010.0000.000
extractDrugKappaShapeIndices0.0000.0000.001
extractDrugKierHallSmarts000
extractDrugLargestChain000
extractDrugLargestPiSystem0.0010.0000.000
extractDrugLengthOverBreadth000
extractDrugLongestAliphaticChain000
extractDrugMACCS0.0000.0010.000
extractDrugMACCSComplete000
extractDrugMDE000
extractDrugMannholdLogP0.0000.0010.001
extractDrugMomentOfInertia000
extractDrugOBFP20.0040.0010.005
extractDrugOBFP30.0010.0010.002
extractDrugOBFP40.0030.0000.004
extractDrugOBMACCS0.0020.0000.003
extractDrugPetitjeanNumber0.0000.0010.000
extractDrugPetitjeanShapeIndex0.0010.0000.000
extractDrugPubChem0.0000.0000.001
extractDrugPubChemComplete0.0000.0010.000
extractDrugRotatableBondsCount000
extractDrugRuleOfFive0.0000.0000.001
extractDrugShortestPath0.0000.0010.000
extractDrugShortestPathComplete0.0000.0000.001
extractDrugStandard0.0010.0000.000
extractDrugStandardComplete0.0000.0010.000
extractDrugTPSA0.0000.0000.001
extractDrugVABC000
extractDrugVAdjMa0.0000.0010.000
extractDrugWHIM0.0000.0000.001
extractDrugWeight000
extractDrugWeightedPath0.0010.0000.001
extractDrugWienerNumbers000
extractDrugXLogP000
extractDrugZagrebIndex0.0000.0000.001
extractPCMBLOSUM0.0030.0010.005
extractPCMDescScales0.0040.0000.005
extractPCMFAScales0.0140.0020.016
extractPCMMDSScales0.0040.0010.004
extractPCMPropScales0.0040.0010.004
extractPCMScales0.0050.0010.006
extractProtAAC0.0010.0010.001
extractProtAPAAC0.2520.0050.259
extractProtCTDC0.0010.0000.002
extractProtCTDD0.0020.0000.002
extractProtCTDT0.0020.0000.002
extractProtCTriad0.0300.0030.034
extractProtDC0.0010.0020.003
extractProtGeary0.0390.0020.041
extractProtMoran0.0380.0030.041
extractProtMoreauBroto0.0340.0020.036
extractProtPAAC0.1190.0020.121
extractProtPSSM0.0010.0000.001
extractProtPSSMAcc0.0000.0000.001
extractProtPSSMFeature0.0000.0010.001
extractProtQSO0.2090.0050.215
extractProtSOCN0.2060.0010.207
extractProtTC0.0100.0320.043
getCPI0.0010.0000.002
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG0.0000.0010.000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0000.002
getProt0.0000.0010.000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem0.0000.0010.000
readFASTA0.0010.0000.001
readMolFromSDF0.0010.0010.001
readMolFromSmi000
readPDB0.2430.0020.244
searchDrug0.0010.0000.001
segProt0.0000.0000.001