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This page was generated on 2026-04-29 10:16 -0400 (Wed, 29 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4988
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4694
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1773/2415HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.48.0  (landing page)
Nan Xiao
Snapshot Date: 2026-04-28 14:14 -0400 (Tue, 28 Apr 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: RELEASE_3_23
git_last_commit: 7b08591
git_last_commit_date: 2026-04-28 08:38:50 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  YES
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  YES
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.48.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.48.0.tar.gz
StartedAt: 2026-04-28 23:13:38 -0400 (Tue, 28 Apr 2026)
EndedAt: 2026-04-28 23:14:28 -0400 (Tue, 28 Apr 2026)
EllapsedTime: 49.8 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.48.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-29 03:13:39 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.48.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.48.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.407   0.225   2.194 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0000.001
AA3DMoRSE0.0000.0010.000
AAACF0.0000.0000.001
AABLOSUM1000.0000.0010.001
AABLOSUM45000
AABLOSUM500.0000.0010.000
AABLOSUM620.0000.0000.001
AABLOSUM800.0000.0000.001
AABurden0.0010.0000.000
AACPSA0.0000.0000.001
AAConn000
AAConst000
AADescAll0.0000.0000.001
AAEdgeAdj0.0000.0010.000
AAEigIdx000
AAFGC0.0000.0010.001
AAGETAWAY000
AAGeom000
AAInfo0.0000.0010.001
AAMOE2D0.0010.0000.000
AAMOE3D0.0000.0000.001
AAMetaInfo0.0000.0010.001
AAMolProp0.0000.0000.001
AAPAM120000
AAPAM250000
AAPAM300.0000.0000.001
AAPAM40000
AAPAM700.0000.0010.000
AARDF0.0000.0000.001
AARandic000
AATopo0.0010.0010.000
AATopoChg0.0000.0000.001
AAWHIM0.0000.0010.001
AAWalk0.0010.0000.000
AAindex000
OptAA3d000
acc0.0100.0020.011
calcDrugFPSim000
calcDrugMCSSim0.0010.0000.003
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.003
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt000
convMolFormat0.0000.0010.000
extractDrugAIO0.0000.0000.001
extractDrugALOGP000
extractDrugAminoAcidCount0.0010.0000.001
extractDrugApol000
extractDrugAromaticAtomsCount0.0000.0010.001
extractDrugAromaticBondsCount0.0010.0000.000
extractDrugAtomCount0.0000.0000.001
extractDrugAutocorrelationCharge000
extractDrugAutocorrelationMass0.0000.0000.001
extractDrugAutocorrelationPolarizability0.0000.0010.000
extractDrugBCUT0.0000.0000.001
extractDrugBPol000
extractDrugBondCount0.0010.0000.001
extractDrugCPSA000
extractDrugCarbonTypes000
extractDrugChiChain0.0010.0000.000
extractDrugChiCluster000
extractDrugChiPath000
extractDrugChiPathCluster000
extractDrugDescOB0.0020.0010.002
extractDrugECI000
extractDrugEstate0.0000.0010.000
extractDrugEstateComplete000
extractDrugExtended000
extractDrugExtendedComplete0.0010.0000.000
extractDrugFMF000
extractDrugFragmentComplexity000
extractDrugGraph0.0000.0000.001
extractDrugGraphComplete000
extractDrugGravitationalIndex0.0000.0000.001
extractDrugHBondAcceptorCount0.0010.0000.001
extractDrugHBondDonorCount000
extractDrugHybridization0.0000.0000.001
extractDrugHybridizationComplete0.0010.0000.000
extractDrugHybridizationRatio0.0000.0000.001
extractDrugIPMolecularLearning000
extractDrugKR0.0010.0000.000
extractDrugKRComplete000
extractDrugKappaShapeIndices000
extractDrugKierHallSmarts000
extractDrugLargestChain000
extractDrugLargestPiSystem0.0000.0000.001
extractDrugLengthOverBreadth0.0000.0010.000
extractDrugLongestAliphaticChain0.0000.0000.001
extractDrugMACCS000
extractDrugMACCSComplete0.0010.0000.000
extractDrugMDE000
extractDrugMannholdLogP000
extractDrugMomentOfInertia000
extractDrugOBFP20.0030.0000.004
extractDrugOBFP30.0010.0010.002
extractDrugOBFP40.0350.0000.036
extractDrugOBMACCS0.0010.0000.003
extractDrugPetitjeanNumber000
extractDrugPetitjeanShapeIndex0.0000.0010.001
extractDrugPubChem000
extractDrugPubChemComplete0.0010.0000.000
extractDrugRotatableBondsCount0.0000.0000.001
extractDrugRuleOfFive0.0010.0000.001
extractDrugShortestPath000
extractDrugShortestPathComplete0.0000.0000.001
extractDrugStandard0.0010.0000.000
extractDrugStandardComplete0.0000.0010.001
extractDrugTPSA000
extractDrugVABC0.0000.0000.001
extractDrugVAdjMa000
extractDrugWHIM0.0000.0000.001
extractDrugWeight0.0000.0010.000
extractDrugWeightedPath0.0010.0000.001
extractDrugWienerNumbers000
extractDrugXLogP0.0000.0000.001
extractDrugZagrebIndex0.0000.0010.001
extractPCMBLOSUM0.0040.0000.004
extractPCMDescScales0.0040.0010.004
extractPCMFAScales0.0100.0010.010
extractPCMMDSScales0.0040.0010.004
extractPCMPropScales0.0040.0000.004
extractPCMScales0.0050.0000.006
extractProtAAC0.0010.0000.001
extractProtAPAAC0.2540.0040.263
extractProtCTDC0.0010.0000.002
extractProtCTDD0.0020.0010.002
extractProtCTDT0.0010.0000.002
extractProtCTriad0.0280.0020.030
extractProtDC0.0010.0010.002
extractProtGeary0.0370.0030.039
extractProtMoran0.0370.0040.042
extractProtMoreauBroto0.0330.0030.036
extractProtPAAC0.1150.0020.122
extractProtPSSM0.0010.0000.001
extractProtPSSMAcc0.0000.0010.001
extractProtPSSMFeature0.0010.0000.000
extractProtQSO0.2070.0020.211
extractProtSOCN0.2030.0010.205
extractProtTC0.0100.0260.037
getCPI0.0010.0010.001
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS0.0000.0000.001
getMolFromChEMBL000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0010.0010.001
getProt0.0000.0000.001
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL0.0000.0000.001
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0000.0000.001
readMolFromSDF0.0010.0010.001
readMolFromSmi0.0000.0000.001
readPDB0.2370.0010.238
searchDrug0.0010.0010.001
segProt0.0000.0000.001