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This page was generated on 2026-02-28 11:35 -0500 (Sat, 28 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4877
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1398/2357HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsBioNet 1.3.2  (landing page)
Anthony Wu
Snapshot Date: 2026-02-27 13:40 -0500 (Fri, 27 Feb 2026)
git_url: https://git.bioconductor.org/packages/MSstatsBioNet
git_branch: devel
git_last_commit: efbcb1d
git_last_commit_date: 2026-02-26 20:56:42 -0500 (Thu, 26 Feb 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  YES
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for MSstatsBioNet in R Universe.

BUILD results for MSstatsBioNet on kjohnson3

To the developers/maintainers of the MSstatsBioNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsBioNet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MSstatsBioNet
Version: 1.3.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsBioNet
StartedAt: 2026-02-27 17:07:47 -0500 (Fri, 27 Feb 2026)
EndedAt: 2026-02-27 17:07:57 -0500 (Fri, 27 Feb 2026)
EllapsedTime: 9.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsBioNet
###
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* checking for file ‘MSstatsBioNet/DESCRIPTION’ ... OK
* preparing ‘MSstatsBioNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MSstatsBioNet.Rmd’ using rmarkdown

Quitting from MSstatsBioNet.Rmd:53-57 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 12/12 in VECTOR_ELT
---
Backtrace:
    ▆
 1. └─MSstatsConvert::FragPipetoMSstatsFormat(input, use_log_file = FALSE)
 2.   └─MSstatsConvert::MSstatsPreprocess(...)
 3.     └─MSstatsConvert:::.filterFewMeasurements(input, 1, FALSE)
 4.       ├─...[]
 5.       └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MSstatsBioNet.Rmd' failed with diagnostics:
attempt access index 12/12 in VECTOR_ELT
--- failed re-building ‘MSstatsBioNet.Rmd’

--- re-building ‘PTM-Analysis.Rmd’ using rmarkdown
--- finished re-building ‘PTM-Analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘MSstatsBioNet.Rmd’

Error: Vignette re-building failed.
In addition: Warning message:
In tools::buildVignettes(dir = ".", tangle = TRUE) :
  Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/Cytoscape-Visualization.Rmd’
(Is a VignetteBuilder field missing?)
Execution halted