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This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4866
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" 4545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 841/2368HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneticsPed 1.73.0  (landing page)
David Henderson
Snapshot Date: 2026-03-20 13:40 -0400 (Fri, 20 Mar 2026)
git_url: https://git.bioconductor.org/packages/GeneticsPed
git_branch: devel
git_last_commit: 41bd03e
git_last_commit_date: 2025-10-29 09:59:21 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
See other builds for GeneticsPed in R Universe.

BUILD results for GeneticsPed on kjohnson3

To the developers/maintainers of the GeneticsPed package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneticsPed.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GeneticsPed
Version: 1.73.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeneticsPed
StartedAt: 2026-03-20 19:22:20 -0400 (Fri, 20 Mar 2026)
EndedAt: 2026-03-20 19:22:21 -0400 (Fri, 20 Mar 2026)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeneticsPed
###
##############################################################################
##############################################################################


* checking for file ‘GeneticsPed/DESCRIPTION’ ... OK
* preparing ‘GeneticsPed’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘GeneticsPed’ ...
** this is package ‘GeneticsPed’ version ‘1.73.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ainverse.cc -o ainverse.o
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:792:28: error: too many arguments provided to function-like macro invocation
  792 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1002:9: note: macro 'length' defined here
 1002 | #define length(x)               Rf_length(x)
      |         ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:791:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
  791 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:792:9: error: expected ';' at end of declaration list
  792 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:874:28: error: too many arguments provided to function-like macro invocation
  874 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1002:9: note: macro 'length' defined here
 1002 | #define length(x)               Rf_length(x)
      |         ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:873:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
  873 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:874:9: error: expected ';' at end of declaration list
  874 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:955:28: error: too many arguments provided to function-like macro invocation
  955 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1002:9: note: macro 'length' defined here
 1002 | #define length(x)               Rf_length(x)
      |         ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:954:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
  954 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:955:9: error: expected ';' at end of declaration list
  955 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1036:28: error: too many arguments provided to function-like macro invocation
 1036 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1002:9: note: macro 'length' defined here
 1002 | #define length(x)               Rf_length(x)
      |         ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1035:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
 1035 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1036:9: error: expected ';' at end of declaration list
 1036 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1118:28: error: too many arguments provided to function-like macro invocation
 1118 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1002:9: note: macro 'length' defined here
 1002 | #define length(x)               Rf_length(x)
      |         ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1117:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
 1117 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1118:9: error: expected ';' at end of declaration list
 1118 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1199:28: error: too many arguments provided to function-like macro invocation
 1199 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |                            ^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:1002:9: note: macro 'length' defined here
 1002 | #define length(x)               Rf_length(x)
      |         ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1198:3: error: '__abi_tag__' attribute only applies to structs, variables, functions, and namespaces
 1198 |   _LIBCPP_HIDE_FROM_ABI int
      |   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:540:22: note: expanded from macro '_LIBCPP_HIDE_FROM_ABI'
  540 |       __attribute__((__abi_tag__(_LIBCPP_TOSTRING(_LIBCPP_ODR_SIGNATURE))))
      |                      ^
In file included from ainverse.cc:9:
In file included from ./../include/ainverse.h:17:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/map:2202:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/functional:600:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/vector:363:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/locale:208:
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__locale:1199:9: error: expected ';' at end of declaration list
 1199 |   length(state_type& __st, const extern_type* __frm, const extern_type* __end, size_t __mx) const {
      |         ^
18 errors generated.
make: *** [ainverse.o] Error 1
ERROR: compilation failed for package ‘GeneticsPed’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmprVlFQp/Rinst11f24168bcf3f/GeneticsPed’
      -----------------------------------
ERROR: package installation failed