| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-02-02 11:32 -0500 (Mon, 02 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4852 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 940/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GSgalgoR 1.21.0 (landing page) Carlos Catania
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for GSgalgoR in R Universe. | ||||||||||||||
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To the developers/maintainers of the GSgalgoR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSgalgoR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GSgalgoR |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSgalgoR |
| StartedAt: 2026-02-01 17:59:24 -0500 (Sun, 01 Feb 2026) |
| EndedAt: 2026-02-01 18:00:59 -0500 (Sun, 01 Feb 2026) |
| EllapsedTime: 94.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSgalgoR
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* checking for file ‘GSgalgoR/DESCRIPTION’ ... OK
* preparing ‘GSgalgoR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GSgalgoR.rmd’ using rmarkdown
--- finished re-building ‘GSgalgoR.rmd’
--- re-building ‘GSgalgoR_callbacks.rmd’ using rmarkdown
Quitting from GSgalgoR_callbacks.rmd:237-252 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `sample.int()`:
! NA in probability vector
---
Backtrace:
▆
1. └─GSgalgoR::galgo(...)
2. └─GSgalgoR:::offsprings(X1, chrom_length, population, TournamentSize)
3. └─GSgalgoR:::asymetric_mutation(off1)
4. └─base::sample(...)
5. └─base::sample.int(length(x), size, replace, prob)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GSgalgoR_callbacks.rmd' failed with diagnostics:
NA in probability vector
--- failed re-building ‘GSgalgoR_callbacks.rmd’
SUMMARY: processing the following file failed:
‘GSgalgoR_callbacks.rmd’
Error: Vignette re-building failed.
Execution halted