| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-04-01 13:06 -0400 (Wed, 01 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.6.0 alpha (2026-03-30 r89742) | 4816 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-03-28 r89739) | 4539 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 564/2374 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DeMixT 1.99.0 (landing page) Ruonan Li
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for DeMixT in R Universe. | ||||||||||||||
|
To the developers/maintainers of the DeMixT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeMixT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DeMixT |
| Version: 1.99.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DeMixT |
| StartedAt: 2026-03-31 15:13:52 -0400 (Tue, 31 Mar 2026) |
| EndedAt: 2026-03-31 15:14:12 -0400 (Tue, 31 Mar 2026) |
| EllapsedTime: 20.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DeMixT
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘DeMixT’ ...
** this is package ‘DeMixT’ version ‘1.99.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -fPIC -falign-functions=64 -Wall -g -O2 -c DeMixNB.c -o DeMixNB.o
In file included from DeMixNB.c:6:
./DeMixNB.h:4:15: warning: unused function 'stirling_approx' [-Wunused-function]
4 | static double stirling_approx(double z)
| ^~~~~~~~~~~~~~~
1 warning generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -fPIC -falign-functions=64 -Wall -g -O2 -c DeMixT.c -o DeMixT.o
DeMixT.c:37:11: warning: variable 'st1_mu_2' set but not used [-Wunused-but-set-variable]
37 | double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
| ^
DeMixT.c:37:22: warning: variable 'st2_mu_2' set but not used [-Wunused-but-set-variable]
37 | double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
| ^
DeMixT.c:37:33: warning: variable 'st1_sig_2' set but not used [-Wunused-but-set-variable]
37 | double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
| ^
DeMixT.c:37:45: warning: variable 'st2_sig_2' set but not used [-Wunused-but-set-variable]
37 | double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
| ^
DeMixT.c:591:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
591 | double obj_old, obj_new;
| ^
DeMixT.c:591:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
591 | double obj_old, obj_new;
| ^
DeMixT.c:1280:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
1280 | double obj_old, obj_new;
| ^
DeMixT.c:1280:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
1280 | double obj_old, obj_new;
| ^
DeMixT.c:1307:9: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
1307 | double obj_old, obj_new;
| ^
DeMixT.c:1307:18: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
1307 | double obj_old, obj_new;
| ^
DeMixT.c:1322:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
1322 | double obj_old, obj_new;
| ^
DeMixT.c:1322:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
1322 | double obj_old, obj_new;
| ^
12 warnings generated.
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -fPIC -falign-functions=64 -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -fPIC -falign-functions=64 -Wall -g -O2 -c Profile_2D.cpp -o Profile_2D.o
Profile_2D.cpp:15:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
15 | double tmp_pos[integ];
| ^~~~~
Profile_2D.cpp:15:20: note: read of non-const variable 'integ' is not allowed in a constant expression
Profile_2D.cpp:14:6: note: declared here
14 | int integ=200;
| ^
Profile_2D.cpp:987:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
987 | int i=1;
| ^
Profile_2D.cpp:1022:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
1022 | int i=1;
| ^
Profile_2D.cpp:1057:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
1057 | int i=1;
| ^
Profile_2D.cpp:1437:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
1437 | int i=1;
| ^
Profile_2D.cpp:1460:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
1460 | int i=1;
| ^
Profile_2D.cpp:1484:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
1484 | int i=1;
| ^
Profile_2D.cpp:1508:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
1508 | int i=1;
| ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include -I/Library/Frameworks/R.framework/Resources/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o DeMixT.so DeMixNB.o DeMixT.o init.o registerDynamicSymbol.o Profile_2D.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6/Resources/library/00LOCK-DeMixT/00new/DeMixT/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DeMixT)