Multiple platform build/check report for BioC 3.23 - BUILD results for COSNet on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences"	4848
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4628
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BUILD results for COSNet on nebbiolo1

To the developers/maintainers of the COSNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COSNet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: COSNet

Version: 1.45.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COSNet

StartedAt: 2026-01-14 17:01:44 -0500 (Wed, 14 Jan 2026)

EndedAt: 2026-01-14 17:03:28 -0500 (Wed, 14 Jan 2026)

EllapsedTime: 104.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COSNet
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* checking for file ‘COSNet/DESCRIPTION’ ... OK
* preparing ‘COSNet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘COSNet_v.Rnw’ using Sweave
Loading required package: limma
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: ‘BiocGenerics’

The following object is masked from ‘package:limma’:

    plotMA

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: RBGL
PerfMeas: Performance Measures for ranking and classification tasks.

Warning in read.table(file = paste(sep = "", "http://frasca.di.unimi.it/",  :
  URL 'https://frasca.di.unimi.it/cosnetdata/u.sum.fly.txt': status was 'Transferred a partial file'

Error: processing vignette 'COSNet_v.Rnw' failed with diagnostics:
 chunk 8 (label = a8) 
Error in read.table(file = paste(sep = "", "http://frasca.di.unimi.it/",  : 
  cannot read from connection

--- failed re-building ‘COSNet_v.Rnw’

SUMMARY: processing the following file failed:
  ‘COSNet_v.Rnw’

Error: Vignette re-building failed.
Execution halted