BUILD results for CGEN on kjohnson3
To the developers/maintainers of the CGEN package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CGEN.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
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raw results
Summary
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CGEN
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* checking for file ‘CGEN/DESCRIPTION’ ... OK
* preparing ‘CGEN’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
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* installing *source* package ‘CGEN’ ...
** this is package ‘CGEN’ version ‘3.47.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Additive.c -o Additive.o
Additive.c:103:21: error: unknown type name 'vec'
103 | static void vecinit(vec, n, c)
| ^
Additive.c:103:26: error: unknown type name 'n'
103 | static void vecinit(vec, n, c)
| ^
Additive.c:103:29: error: unknown type name 'c'
103 | static void vecinit(vec, n, c)
| ^
Additive.c:103:31: error: expected ';' after top level declarator
103 | static void vecinit(vec, n, c)
| ^
| ;
Additive.c:107:1: error: expected identifier or '('
107 | {
| ^
Additive.c:115:21: error: unknown type name 'invec'
115 | static void vecmove(invec, n, outvec)
| ^
Additive.c:115:28: error: unknown type name 'n'
115 | static void vecmove(invec, n, outvec)
| ^
Additive.c:115:31: error: unknown type name 'outvec'
115 | static void vecmove(invec, n, outvec)
| ^
Additive.c:115:38: error: expected ';' after top level declarator
115 | static void vecmove(invec, n, outvec)
| ^
| ;
Additive.c:119:1: error: expected identifier or '('
119 | {
| ^
Additive.c:130:24: error: unknown type name 'invec'
130 | static void vecMultCon(invec, n, c, ret)
| ^
Additive.c:130:31: error: unknown type name 'n'
130 | static void vecMultCon(invec, n, c, ret)
| ^
Additive.c:130:34: error: unknown type name 'c'
130 | static void vecMultCon(invec, n, c, ret)
| ^
Additive.c:130:37: error: unknown type name 'ret'
130 | static void vecMultCon(invec, n, c, ret)
| ^
Additive.c:130:41: error: expected ';' after top level declarator
130 | static void vecMultCon(invec, n, c, ret)
| ^
| ;
Additive.c:135:1: error: expected identifier or '('
135 | {
| ^
Additive.c:144:26: error: unknown type name 'mat'
144 | static void rMatMMultVec(mat, nrow, ncol, vec, ret)
| ^
Additive.c:144:31: error: unknown type name 'nrow'
144 | static void rMatMMultVec(mat, nrow, ncol, vec, ret)
| ^
Additive.c:144:37: error: unknown type name 'ncol'
144 | static void rMatMMultVec(mat, nrow, ncol, vec, ret)
| ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [Additive.o] Error 1
ERROR: compilation failed for package ‘CGEN’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmptSi4y4/Rinstbafe6ff401fe/CGEN’
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ERROR: package installation failed
