Multiple platform build/check report for BioC 3.23 - BUILD results for ACME on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4866
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"	4545
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ACME on kjohnson3

To the developers/maintainers of the ACME package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ACME.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ACME

Version: 2.67.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ACME

StartedAt: 2026-03-20 18:31:25 -0400 (Fri, 20 Mar 2026)

EndedAt: 2026-03-20 18:31:26 -0400 (Fri, 20 Mar 2026)

EllapsedTime: 1.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ACME
###
##############################################################################
##############################################################################


* checking for file ‘ACME/DESCRIPTION’ ... OK
* preparing ‘ACME’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘ACME’ ...
** this is package ‘ACME’ version ‘2.67.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c windowChisq.c -o windowChisq.o
windowChisq.c:57:71: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses]
   57 |     while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) &
      |                                                                       ^
   58 |           firstprobe>0) {
      |           ~~~~~~~~~~~~
windowChisq.c:57:71: note: place parentheses around the '>' expression to silence this warning
   57 |     while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) &
      |                                                                       ^
   58 |           firstprobe>0) {
      |                       
      |           (           )
windowChisq.c:57:71: note: place parentheses around the & expression to evaluate it first
   57 |     while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) &
      |                                                                       ^
      |           (
   58 |           firstprobe>0) {
      |                     
      |                     )
windowChisq.c:62:70: warning: & has lower precedence than <; < will be evaluated first [-Wparentheses]
   62 |     while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) &
      |                                                                      ^
   63 |           lastprobe<(na-1)) {
      |           ~~~~~~~~~~~~~~~~
windowChisq.c:62:70: note: place parentheses around the '<' expression to silence this warning
   62 |     while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) &
      |                                                                      ^
   63 |           lastprobe<(na-1)) {
      |                           
      |           (               )
windowChisq.c:62:70: note: place parentheses around the & expression to evaluate it first
   62 |     while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) &
      |                                                                      ^
      |           (
   63 |           lastprobe<(na-1)) {
      |                    
      |                    )
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
   21 |   double *xa,*xlocations,*xchivals;
      |           ^~
windowChisq.c:86:20: error: incompatible function pointer types initializing 'DL_FUNC' (aka 'void *(*)(void)') with an expression of type 'SEXP (*)(SEXP, SEXP, SEXP, SEXP, SEXP)' (aka 'struct SEXPREC *(*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)') [-Wincompatible-function-pointer-types]
   86 |     {"windowChisq",&windowChisq,5},
      |                    ^~~~~~~~~~~~
3 warnings and 1 error generated.
make: *** [windowChisq.o] Error 1
ERROR: compilation failed for package ‘ACME’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpJPPLcE/Rinst458738368945/ACME’
      -----------------------------------
ERROR: package installation failed