Britta Velten
| Snapshot Date: 2026-03-31 13:45 -0400 (Tue, 31 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_22 |
| git_last_commit: 76fc31b |
| git_last_commit_date: 2025-10-29 10:49:21 -0400 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-04-01 11:57 -0400 (Wed, 01 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4896 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.26.0 (landing page) Britta Velten
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz |
| StartedAt: 2026-04-01 00:07:12 -0400 (Wed, 01 Apr 2026) |
| EndedAt: 2026-04-01 00:08:43 -0400 (Wed, 01 Apr 2026) |
| EllapsedTime: 91.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings graper_1.26.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
* checking installed package size ... INFO
installed size is 6.1Mb
sub-directories of 1Mb or more:
libs 6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.26.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.22-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.22-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.22-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.22-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-828.568
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.093
ELB improved by 246.475
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.141
ELB improved by 61.9519
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.462
ELB improved by 45.6782
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.628
ELB improved by 23.8347
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.929
ELB improved by 10.6987
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.261
ELB improved by 5.66771
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.935
ELB improved by 4.32626
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.877
ELB improved by 4.05791
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.812
ELB improved by 4.06555
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.709
ELB improved by 4.1026
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.723
ELB improved by 3.98559
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.145
ELB improved by 3.57826
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.251
ELB improved by 2.89386
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.13
ELB improved by 2.1216
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.662
ELB improved by 1.46735
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.656
ELB improved by 1.00667
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.944
ELB improved by 0.711218
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.417
ELB improved by 0.526992
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.007
ELB improved by 0.410484
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.673
ELB improved by 0.333712
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.393
ELB improved by 0.280351
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.152
ELB improved by 0.2413
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.94
ELB improved by 0.211525
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.752
ELB improved by 0.188165
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.582
ELB improved by 0.16951
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.428
ELB improved by 0.154465
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.286
ELB improved by 0.142287
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.153
ELB improved by 0.132446
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.029
ELB improved by 0.124547
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.91
ELB improved by 0.118286
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.797
ELB improved by 0.113425
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.687
ELB improved by 0.109773
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.58
ELB improved by 0.10717
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.475
ELB improved by 0.105483
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.37
ELB improved by 0.104593
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.266
ELB improved by 0.104394
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.161
ELB improved by 0.104784
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.055
ELB improved by 0.105666
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.948
ELB improved by 0.106943
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.84
ELB improved by 0.108519
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.729
ELB improved by 0.110297
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.617
ELB improved by 0.112183
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.503
ELB improved by 0.114088
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.387
ELB improved by 0.11593
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.27
ELB improved by 0.117643
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.15
ELB improved by 0.119177
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.03
ELB improved by 0.120504
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.908
ELB improved by 0.12162
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.786
ELB improved by 0.122541
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.662
ELB improved by 0.123299
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.538
ELB improved by 0.123936
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.414
ELB improved by 0.124497
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.289
ELB improved by 0.125018
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.163
ELB improved by 0.125524
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.037
ELB improved by 0.126022
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.911
ELB improved by 0.126497
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.784
ELB improved by 0.126911
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.657
ELB improved by 0.127206
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.529
ELB improved by 0.127304
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.402
ELB improved by 0.127113
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.276
ELB improved by 0.126538
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.15
ELB improved by 0.125491
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.026
ELB improved by 0.123906
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.905
ELB improved by 0.121753
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.786
ELB improved by 0.119039
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.67
ELB improved by 0.115815
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.558
ELB improved by 0.112158
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.449
ELB improved by 0.108155
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.346
ELB improved by 0.103883
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.246
ELB improved by 0.0993928
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.152
ELB improved by 0.0947039
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.062
ELB improved by 0.0898148
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.977
ELB improved by 0.084723
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.898
ELB improved by 0.0794466
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.823
ELB improved by 0.074036
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.755
ELB improved by 0.0685719
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.692
ELB improved by 0.0631525
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.634
ELB improved by 0.0578757
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.581
ELB improved by 0.0528252
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.533
ELB improved by 0.0480628
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.489
ELB improved by 0.0436267
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.45
ELB improved by 0.0395345
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.414
ELB improved by 0.0357874
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.382
ELB improved by 0.0323754
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.352
ELB improved by 0.0292813
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.326
ELB improved by 0.0264839
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.302
ELB improved by 0.02396
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.28
ELB improved by 0.0216864
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.261
ELB improved by 0.0196402
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.243
ELB improved by 0.0177998
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.227
ELB improved by 0.0161451
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.212
ELB improved by 0.0146575
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.199
ELB improved by 0.01332
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.187
ELB improved by 0.0121171
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.176
ELB improved by 0.0110349
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.165
ELB improved by 0.0100609
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.156
ELB improved by 0.00918375
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-853.508
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-593.595
ELB improved by 259.913
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-537.884
ELB improved by 55.7111
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-494.777
ELB improved by 43.1073
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.779
ELB improved by 22.9976
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.081
ELB improved by 10.6986
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.931
ELB improved by 6.14945
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.452
ELB improved by 5.4791
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.598
ELB improved by 5.85407
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.373
ELB improved by 6.22548
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.273
ELB improved by 6.09952
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.966
ELB improved by 5.30683
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.843
ELB improved by 4.12312
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.888
ELB improved by 2.95462
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.88
ELB improved by 2.00808
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.536
ELB improved by 1.34477
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.617
ELB improved by 0.918531
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.968
ELB improved by 0.648611
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.497
ELB improved by 0.471597
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.145
ELB improved by 0.351741
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.875
ELB improved by 0.269886
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.662
ELB improved by 0.213458
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.488
ELB improved by 0.173582
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.344
ELB improved by 0.144445
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.221
ELB improved by 0.122471
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.116
ELB improved by 0.10547
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.024
ELB improved by 0.0920569
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.942
ELB improved by 0.0813173
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.87
ELB improved by 0.0726207
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.804
ELB improved by 0.0655177
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.745
ELB improved by 0.0596793
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.69
ELB improved by 0.0548597
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.639
ELB improved by 0.0508722
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.591
ELB improved by 0.0475727
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.546
ELB improved by 0.0448489
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.504
ELB improved by 0.0426125
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.463
ELB improved by 0.0407934
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.424
ELB improved by 0.0393355
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.385
ELB improved by 0.038194
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.348
ELB improved by 0.0373331
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.311
ELB improved by 0.036724
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.275
ELB improved by 0.036344
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.239
ELB improved by 0.0361756
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.203
ELB improved by 0.0362054
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.166
ELB improved by 0.0364241
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.129
ELB improved by 0.0368259
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.092
ELB improved by 0.0374089
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.054
ELB improved by 0.0381744
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.015
ELB improved by 0.0391279
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.974
ELB improved by 0.0402793
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.933
ELB improved by 0.0416437
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.89
ELB improved by 0.0432427
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.844
ELB improved by 0.0451064
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.797
ELB improved by 0.0472755
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.747
ELB improved by 0.0498057
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.695
ELB improved by 0.0527723
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.638
ELB improved by 0.0562778
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.578
ELB improved by 0.0604623
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.512
ELB improved by 0.0655161
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.441
ELB improved by 0.0716951
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.361
ELB improved by 0.0793313
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.273
ELB improved by 0.0888248
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.172
ELB improved by 0.100585
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.057
ELB improved by 0.114875
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.926
ELB improved by 0.131543
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.776
ELB improved by 0.149782
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.607
ELB improved by 0.168242
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.422
ELB improved by 0.185649
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.22
ELB improved by 0.201423
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.005
ELB improved by 0.215613
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.776
ELB improved by 0.228362
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.537
ELB improved by 0.23956
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.288
ELB improved by 0.248832
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.032
ELB improved by 0.255674
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.773
ELB improved by 0.259607
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.512
ELB improved by 0.260331
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.255
ELB improved by 0.257882
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.002
ELB improved by 0.25276
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.756
ELB improved by 0.245993
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.517
ELB improved by 0.239094
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.283
ELB improved by 0.233886
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.051
ELB improved by 0.232208
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.815
ELB improved by 0.235768
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.568
ELB improved by 0.246585
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.301
ELB improved by 0.267165
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.007
ELB improved by 0.294536
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.698
ELB improved by 0.308601
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.407
ELB improved by 0.291003
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.148
ELB improved by 0.259032
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.91
ELB improved by 0.238427
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.671
ELB improved by 0.238379
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.417
ELB improved by 0.253885
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.16
ELB improved by 0.257173
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.944
ELB improved by 0.215971
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.794
ELB improved by 0.150497
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.694
ELB improved by 0.09943
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.625
ELB improved by 0.0695913
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.571
ELB improved by 0.0532925
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.527
ELB improved by 0.0440927
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.489
ELB improved by 0.0383213
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.455
ELB improved by 0.0339302
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.425
ELB improved by 0.0298223
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.4
ELB improved by 0.0256209
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.378
ELB improved by 0.0214803
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.36
ELB improved by 0.0177609
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.346
ELB improved by 0.0147178
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.333
ELB improved by 0.0123905
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.322
ELB improved by 0.0106727
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.313
ELB improved by 0.00941731
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-875.046
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-564.505
ELB improved by 310.54
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-507.433
ELB improved by 57.0719
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.955
ELB improved by 31.4787
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.254
ELB improved by 12.701
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.266
ELB improved by 6.98776
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.543
ELB improved by 5.7226
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.579
ELB improved by 5.96414
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.104
ELB improved by 6.47512
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.764
ELB improved by 6.34055
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.573
ELB improved by 5.19102
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.001
ELB improved by 3.57185
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.747
ELB improved by 2.25358
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.289
ELB improved by 1.45839
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.258
ELB improved by 1.03039
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.463
ELB improved by 0.795592
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.807
ELB improved by 0.655662
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.243
ELB improved by 0.564246
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.743
ELB improved by 0.499738
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.292
ELB improved by 0.451388
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.879
ELB improved by 0.413261
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.497
ELB improved by 0.381425
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.145
ELB improved by 0.352585
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.82
ELB improved by 0.324066
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.526
ELB improved by 0.294781
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.26
ELB improved by 0.265541
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.022
ELB improved by 0.237881
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.809
ELB improved by 0.212815
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.619
ELB improved by 0.190615
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.448
ELB improved by 0.171131
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.294
ELB improved by 0.154076
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.154
ELB improved by 0.139146
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.028
ELB improved by 0.126063
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.914
ELB improved by 0.114577
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.809
ELB improved by 0.104472
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.714
ELB improved by 0.0955594
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.626
ELB improved by 0.0876768
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.545
ELB improved by 0.080686
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.471
ELB improved by 0.0744688
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.402
ELB improved by 0.0689244
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.338
ELB improved by 0.063967
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.279
ELB improved by 0.0595233
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.223
ELB improved by 0.0555306
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.171
ELB improved by 0.051935
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.122
ELB improved by 0.0486902
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.077
ELB improved by 0.0457561
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.034
ELB improved by 0.043098
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.993
ELB improved by 0.0406855
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.954
ELB improved by 0.0384922
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.918
ELB improved by 0.0364948
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.883
ELB improved by 0.0346728
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.85
ELB improved by 0.0330079
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.819
ELB improved by 0.031484
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.789
ELB improved by 0.0300867
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.76
ELB improved by 0.028803
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.732
ELB improved by 0.0276214
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.706
ELB improved by 0.0265312
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.68
ELB improved by 0.0255232
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.656
ELB improved by 0.0245887
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.632
ELB improved by 0.0237201
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.609
ELB improved by 0.0229102
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.587
ELB improved by 0.0221528
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.565
ELB improved by 0.0214421
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.545
ELB improved by 0.0207729
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.524
ELB improved by 0.0201408
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.505
ELB improved by 0.0195415
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.486
ELB improved by 0.0189716
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.467
ELB improved by 0.0184279
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.45
ELB improved by 0.0179078
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.432
ELB improved by 0.0174093
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.415
ELB improved by 0.0169308
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.399
ELB improved by 0.016471
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.383
ELB improved by 0.0160295
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.367
ELB improved by 0.015606
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.352
ELB improved by 0.015201
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.337
ELB improved by 0.0148156
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.323
ELB improved by 0.0144513
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.309
ELB improved by 0.0141106
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.295
ELB improved by 0.0137967
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.281
ELB improved by 0.0135139
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.268
ELB improved by 0.0132677
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.255
ELB improved by 0.0130656
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.242
ELB improved by 0.0129172
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.229
ELB improved by 0.0128356
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.216
ELB improved by 0.0128389
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.203
ELB improved by 0.0129524
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.19
ELB improved by 0.0132128
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.176
ELB improved by 0.0136748
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.162
ELB improved by 0.0144227
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.146
ELB improved by 0.0155905
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.129
ELB improved by 0.0173997
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.109
ELB improved by 0.0202278
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.084
ELB improved by 0.024737
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.052
ELB improved by 0.0320945
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.008
ELB improved by 0.0442542
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.944
ELB improved by 0.0638123
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.853
ELB improved by 0.0913563
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.735
ELB improved by 0.117414
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.615
ELB improved by 0.12063
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.517
ELB improved by 0.0970433
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.447
ELB improved by 0.0708474
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.391
ELB improved by 0.0552808
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.344
ELB improved by 0.0468757
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.303
ELB improved by 0.0414018
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.266
ELB improved by 0.0372053
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.232
ELB improved by 0.0337398
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.201
ELB improved by 0.0307708
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.173
ELB improved by 0.0281599
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.147
ELB improved by 0.0258141
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.124
ELB improved by 0.0236711
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.102
ELB improved by 0.0216913
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.082
ELB improved by 0.0198528
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.064
ELB improved by 0.0181452
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.047
ELB improved by 0.016565
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.032
ELB improved by 0.0151117
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.019
ELB improved by 0.0137858
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.006
ELB improved by 0.0125873
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.994
ELB improved by 0.0115151
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.984
ELB improved by 0.0105677
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.974
ELB improved by 0.00974312
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-835.781
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-573.715
ELB improved by 262.066
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-510.914
ELB improved by 62.8012
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.961
ELB improved by 42.9528
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.929
ELB improved by 19.0315
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.17
ELB improved by 8.7594
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.992
ELB improved by 6.17761
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.669
ELB improved by 6.32332
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.318
ELB improved by 7.35123
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.057
ELB improved by 8.26136
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.194
ELB improved by 7.86261
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.249
ELB improved by 5.94494
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.563
ELB improved by 3.68641
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.472
ELB improved by 2.0906
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.243
ELB improved by 1.2287
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.438
ELB improved by 0.805641
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.836
ELB improved by 0.601896
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.334
ELB improved by 0.5021
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.894
ELB improved by 0.439783
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.517
ELB improved by 0.376728
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.205
ELB improved by 0.312017
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.943
ELB improved by 0.261776
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.712
ELB improved by 0.230837
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.496
ELB improved by 0.215982
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.281
ELB improved by 0.21528
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.053
ELB improved by 0.228258
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.806
ELB improved by 0.247416
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.555
ELB improved by 0.250924
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.328
ELB improved by 0.226265
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.137
ELB improved by 0.191721
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.971
ELB improved by 0.165539
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.822
ELB improved by 0.149512
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.682
ELB improved by 0.139591
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.549
ELB improved by 0.132585
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.423
ELB improved by 0.126876
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.301
ELB improved by 0.121783
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.184
ELB improved by 0.117059
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.071
ELB improved by 0.112639
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.963
ELB improved by 0.108532
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.858
ELB improved by 0.104764
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.756
ELB improved by 0.101366
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.658
ELB improved by 0.0983556
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.562
ELB improved by 0.0957414
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.469
ELB improved by 0.0935175
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.377
ELB improved by 0.0916669
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.287
ELB improved by 0.0901626
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.198
ELB improved by 0.0889703
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.11
ELB improved by 0.0880496
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.023
ELB improved by 0.0873561
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.936
ELB improved by 0.0868422
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.849
ELB improved by 0.0864584
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.763
ELB improved by 0.0861538
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.677
ELB improved by 0.0858767
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.592
ELB improved by 0.0855756
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.506
ELB improved by 0.0851997
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.422
ELB improved by 0.0846996
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.338
ELB improved by 0.0840288
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.255
ELB improved by 0.0831444
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.173
ELB improved by 0.0820082
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.092
ELB improved by 0.0805885
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.013
ELB improved by 0.0788606
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.936
ELB improved by 0.0768089
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.862
ELB improved by 0.0744273
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.79
ELB improved by 0.0717209
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.721
ELB improved by 0.0687065
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.656
ELB improved by 0.0654129
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.594
ELB improved by 0.0618799
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.536
ELB improved by 0.0581573
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.482
ELB improved by 0.0543021
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.431
ELB improved by 0.0503756
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.385
ELB improved by 0.0464395
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.342
ELB improved by 0.0425528
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.304
ELB improved by 0.0387688
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.268
ELB improved by 0.0351331
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.237
ELB improved by 0.0316819
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.208
ELB improved by 0.0284426
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.183
ELB improved by 0.0254333
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.16
ELB improved by 0.022664
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.14
ELB improved by 0.0201377
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.122
ELB improved by 0.0178516
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.106
ELB improved by 0.0157979
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.092
ELB improved by 0.0139653
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.08
ELB improved by 0.0123401
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.069
ELB improved by 0.0109065
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.06
ELB improved by 0.00964813
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.335 0.192 2.514
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.052 | 0.004 | 0.057 | |
| getPIPs | 0.051 | 0.000 | 0.051 | |
| graper | 0.080 | 0.003 | 0.083 | |
| makeExampleData | 0.009 | 0.001 | 0.010 | |
| makeExampleDataWithUnequalGroups | 0.008 | 0.004 | 0.012 | |
| plotELBO | 0.324 | 0.019 | 0.344 | |
| plotGroupPenalties | 1.124 | 0.042 | 1.166 | |
| plotPosterior | 0.646 | 0.009 | 0.654 | |
| predict.graper | 2.044 | 0.013 | 2.057 | |
| print.graper | 0.047 | 0.004 | 0.051 | |