Catherine Ross
| Snapshot Date: 2026-01-12 13:45 -0500 (Mon, 12 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/fedup |
| git_branch: RELEASE_3_22 |
| git_last_commit: d4b9c03 |
| git_last_commit_date: 2025-10-29 11:07:28 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-01-15 11:59 -0500 (Thu, 15 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4886 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4672 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 729/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fedup 1.18.0 (landing page) Catherine Ross
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the fedup package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fedup.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: fedup |
| Version: 1.18.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fedup |
| StartedAt: 2026-01-13 01:40:07 -0000 (Tue, 13 Jan 2026) |
| EndedAt: 2026-01-13 01:46:16 -0000 (Tue, 13 Jan 2026) |
| EllapsedTime: 369.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data fedup
###
##############################################################################
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* checking for file ‘fedup/DESCRIPTION’ ... OK
* preparing ‘fedup’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fedup_doubleTest.rmd’ using rmarkdown
Quitting from fedup_doubleTest.rmd:167-181 [fedupDotPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `list2()`:
! object 'ffi_list2' not found
---
Backtrace:
▆
1. └─fedup::plotDotPlot(...)
2. └─ggplot2::geom_point(...)
3. ├─ggplot2::layer(...)
4. └─rlang::list2(na.rm = na.rm, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fedup_doubleTest.rmd' failed with diagnostics:
object 'ffi_list2' not found
--- failed re-building ‘fedup_doubleTest.rmd’
--- re-building ‘fedup_mutliTest.rmd’ using rmarkdown
Quitting from fedup_mutliTest.rmd:178-192 [fedupDotPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `list2()`:
! object 'ffi_list2' not found
---
Backtrace:
▆
1. └─fedup::plotDotPlot(...)
2. └─ggplot2::geom_point(...)
3. ├─ggplot2::layer(...)
4. └─rlang::list2(na.rm = na.rm, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fedup_mutliTest.rmd' failed with diagnostics:
object 'ffi_list2' not found
--- failed re-building ‘fedup_mutliTest.rmd’
--- re-building ‘fedup_singleTest.rmd’ using rmarkdown
Quitting from fedup_singleTest.rmd:156-169 [fedupDotPlot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `list2()`:
! object 'ffi_list2' not found
---
Backtrace:
▆
1. └─fedup::plotDotPlot(...)
2. └─ggplot2::geom_point(...)
3. ├─ggplot2::layer(...)
4. └─rlang::list2(na.rm = na.rm, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'fedup_singleTest.rmd' failed with diagnostics:
object 'ffi_list2' not found
--- failed re-building ‘fedup_singleTest.rmd’
SUMMARY: processing the following files failed:
‘fedup_doubleTest.rmd’ ‘fedup_mutliTest.rmd’ ‘fedup_singleTest.rmd’
Error: Vignette re-building failed.
Execution halted