| Back to Build/check report for BioC 3.22: simplified long |
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This page was generated on 2026-03-31 11:58 -0400 (Tue, 31 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2057/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPediaR 1.36.0 (landing page) David Montaner
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for SNPediaR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SNPediaR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPediaR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SNPediaR |
| Version: 1.36.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SNPediaR |
| StartedAt: 2026-03-30 20:05:34 -0400 (Mon, 30 Mar 2026) |
| EndedAt: 2026-03-30 20:05:51 -0400 (Mon, 30 Mar 2026) |
| EllapsedTime: 17.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SNPediaR
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* checking for file ‘SNPediaR/DESCRIPTION’ ... OK
* preparing ‘SNPediaR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SNPediaR.Rmd’ using rmarkdown
Quitting from SNPediaR.Rmd:116-120 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! lexical error: invalid char in json text.
<html> \n<head><title>502 Bad G
(right here) ------^
---
Backtrace:
▆
1. └─SNPediaR::getPages(titles = c("Rs53576", "Rs1815739"), wikiParseFunction = findPMID)
2. └─jsonlite::fromJSON(datos)
3. └─jsonlite:::parse_and_simplify(...)
4. └─jsonlite:::parseJSON(txt, bigint_as_char)
5. └─jsonlite:::parse_string(txt, bigint_as_char)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SNPediaR.Rmd' failed with diagnostics:
lexical error: invalid char in json text.
<html> \n<head><title>502 Bad G
(right here) ------^
--- failed re-building ‘SNPediaR.Rmd’
SUMMARY: processing the following file failed:
‘SNPediaR.Rmd’
Error: Vignette re-building failed.
Execution halted