| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-02-05 11:57 -0500 (Thu, 05 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4888 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1055/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IMPCdata 1.46.0 (landing page) Jeremy Mason
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for IMPCdata in R Universe. | ||||||||||||||
|
To the developers/maintainers of the IMPCdata package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IMPCdata.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: IMPCdata |
| Version: 1.46.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings IMPCdata_1.46.0.tar.gz |
| StartedAt: 2026-02-04 00:37:31 -0500 (Wed, 04 Feb 2026) |
| EndedAt: 2026-02-04 00:39:41 -0500 (Wed, 04 Feb 2026) |
| EllapsedTime: 130.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMPCdata.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings IMPCdata_1.46.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/IMPCdata.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.46.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getPhenCenters 1.051 0.070 11.875
printPhenCenters 0.140 0.009 6.385
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘IMPCdata’ ... ** this is package ‘IMPCdata’ version ‘1.46.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
| name | user | system | elapsed | |
| getAlleles | 0.399 | 0.038 | 3.583 | |
| getGenes | 0.484 | 0.037 | 2.831 | |
| getIMPCDataset | 0.092 | 0.007 | 1.070 | |
| getIMPCTable | 0.336 | 0.019 | 2.425 | |
| getName | 0.068 | 0.006 | 0.626 | |
| getParameters | 0.393 | 0.021 | 3.111 | |
| getPhenCenters | 1.051 | 0.070 | 11.875 | |
| getPipelines | 0.477 | 0.040 | 3.662 | |
| getProcedures | 0.461 | 0.032 | 4.030 | |
| getStrains | 0.213 | 0.006 | 1.796 | |
| getZygosities | 0.099 | 0.004 | 0.487 | |
| printAlleles | 0.426 | 0.024 | 2.778 | |
| printGenes | 0.427 | 0.032 | 2.781 | |
| printParameters | 0.495 | 0.027 | 2.975 | |
| printPhenCenters | 0.140 | 0.009 | 6.385 | |
| printPipelines | 0.511 | 0.028 | 3.458 | |
| printProcedures | 0.478 | 0.031 | 4.211 | |
| printStrains | 0.233 | 0.011 | 2.552 | |