| Back to Workflows build report for BioC 3.21 |
This page was generated on 2025-02-14 16:30 -0500 (Fri, 14 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4719 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4481 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4492 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 19/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| recountWorkflow 1.31.0 (landing page) Leonardo Collado-Torres
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | |||||||||
|
To the developers/maintainers of the recountWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: recountWorkflow |
| Version: 1.31.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountWorkflow |
| StartedAt: 2025-02-14 13:06:10 -0500 (Fri, 14 Feb 2025) |
| EndedAt: 2025-02-14 13:22:58 -0500 (Fri, 14 Feb 2025) |
| EllapsedTime: 1007.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recountWorkflow ### ############################################################################## ############################################################################## * checking for file ‘recountWorkflow/DESCRIPTION’ ... OK * preparing ‘recountWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘recount-workflow.Rmd’ using rmarkdown trying URL 'http://duffel.rail.bio/recount/v2/SRP045638/rse_gene.Rdata' Content type 'binary/octet-stream' length 12604886 bytes (12.0 MB) ================================================== downloaded 12.0 MB trying URL 'https://github.com/leekgroup/recount-website/blob/master/predictions/PredictedPhenotypes_v0.0.06.rda?raw=true' Content type 'application/octet-stream' length 548129 bytes (535 KB) ================================================== downloaded 535 KB [WARNING] This document format requires a nonempty <title> element. Please specify either 'title' or 'pagetitle' in the metadata, e.g. by using --metadata pagetitle="..." on the command line. Falling back to 'gene_report.knit' trying URL 'http://duffel.rail.bio/recount/v2/SRP045638/rse_exon.Rdata' trying URL 'http://duffel.rail.bio/recount/v2/SRP045638/rse_exon.Rdata' trying URL 'http://duffel.rail.bio/recount/v2/SRP045638/rse_exon.Rdata' Quitting from lines 625-654 [exondeanalysis1] (recount-workflow.Rmd) Error: processing vignette 'recount-workflow.Rmd' failed with diagnostics: 'download_retry()' failed: URL: http://duffel.rail.bio/recount/v2/SRP045638/rse_exon.Rdata error: cannot open URL 'http://duffel.rail.bio/recount/v2/SRP045638/rse_exon.Rdata' --- failed re-building ‘recount-workflow.Rmd’ SUMMARY: processing the following file failed: ‘recount-workflow.Rmd’ Error: Vignette re-building failed. Execution halted