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This page was generated on 2024-12-19 15:01 -0500 (Thu, 19 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4754
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 288/430HostnameOS / ArchINSTALLBUILDCHECK
PasillaTranscriptExpr 1.35.0  (landing page)
Malgorzata Nowicka
Snapshot Date: 2024-12-19 07:30 -0500 (Thu, 19 Dec 2024)
git_url: https://git.bioconductor.org/packages/PasillaTranscriptExpr
git_branch: devel
git_last_commit: 5eff572
git_last_commit_date: 2024-10-29 09:45:14 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for PasillaTranscriptExpr on nebbiolo1

To the developers/maintainers of the PasillaTranscriptExpr package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: PasillaTranscriptExpr
Version: 1.35.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:PasillaTranscriptExpr.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings PasillaTranscriptExpr_1.35.0.tar.gz
StartedAt: 2024-12-19 13:32:08 -0500 (Thu, 19 Dec 2024)
EndedAt: 2024-12-19 13:36:11 -0500 (Thu, 19 Dec 2024)
EllapsedTime: 243.2 seconds
RetCode: 0
Status:   OK  
CheckDir: PasillaTranscriptExpr.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:PasillaTranscriptExpr.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings PasillaTranscriptExpr_1.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/PasillaTranscriptExpr.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘PasillaTranscriptExpr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PasillaTranscriptExpr’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PasillaTranscriptExpr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
  Cannot process chunk/lines:
    v0.1.1: - Adapted package for Bioconductor submission
  Cannot process chunk/lines:
    v0.99.0: - Bioconductor submission
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/PasillaTranscriptExpr.Rcheck/00check.log’
for details.


Installation output

PasillaTranscriptExpr.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL PasillaTranscriptExpr
###
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘PasillaTranscriptExpr’ ...
** using staged installation
** inst
** help
No man pages found in package  ‘PasillaTranscriptExpr’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PasillaTranscriptExpr)

Tests output


Example timings