Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2024-12-19 15:01 -0500 (Thu, 19 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 70/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
COPDSexualDimorphism.data 1.43.0 (landing page) J Fah Sathirapongsasuti
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the COPDSexualDimorphism.data package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: COPDSexualDimorphism.data |
Version: 1.43.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings COPDSexualDimorphism.data_1.43.0.tar.gz |
StartedAt: 2024-12-19 12:06:47 -0500 (Thu, 19 Dec 2024) |
EndedAt: 2024-12-19 12:11:32 -0500 (Thu, 19 Dec 2024) |
EllapsedTime: 285.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: COPDSexualDimorphism.data.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:COPDSexualDimorphism.data.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings COPDSexualDimorphism.data_1.43.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/COPDSexualDimorphism.data.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘COPDSexualDimorphism.data/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘COPDSexualDimorphism.data’ version ‘1.43.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘COPDSexualDimorphism.data’ can be installed ... OK * checking installed package size ... INFO installed size is 34.5Mb sub-directories of 1Mb or more: data 34.4Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... NOTE Invalid package aliases in Rd file 'COPDSexualDimorphism.data-package.Rd': ‘COPDSexualDimorphism-package’ * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress lgrc.eqtl.rda 1.3Mb 655Kb xz lgrc.expr.rda 11.0Mb 7.6Mb xz lgrc.genes.rda 640Kb 367Kb xz * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.21-data-experiment/meat/COPDSexualDimorphism.data.Rcheck/00check.log’ for details.
COPDSexualDimorphism.data.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL COPDSexualDimorphism.data ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘COPDSexualDimorphism.data’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COPDSexualDimorphism.data)
COPDSexualDimorphism.data.Rcheck/COPDSexualDimorphism.data-Ex.timings
name | user | system | elapsed | |
COPDSexualDimorphism.data-package | 0.228 | 0.025 | 0.252 | |
lgrc.expr | 0.470 | 0.044 | 0.514 | |