Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	870
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CHECK results for xcms on teran2

To the developers/maintainers of the xcms package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: xcms

Version: 4.5.4

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:xcms.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings xcms_4.5.4.tar.gz

StartedAt: 2025-03-26 20:45:07 -0400 (Wed, 26 Mar 2025)

EndedAt: 2025-03-26 20:45:12 -0400 (Wed, 26 Mar 2025)

EllapsedTime: 5.2 seconds

RetCode: 1

Status: ERROR

CheckDir: xcms.Rcheck

Warnings: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:xcms.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings xcms_4.5.4.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/xcms.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘xcms/DESCRIPTION’ ... OK
* this is package ‘xcms’ version ‘4.5.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  download from 'https://CRAN.R-project.org/src/contrib/PACKAGES' failed
Warning: unable to access index for repository https://bioconductor.org/packages/3.20/data/experiment/src/contrib:
  download from 'https://bioconductor.org/packages/3.20/data/experiment/src/contrib/PACKAGES' failed
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Error: inferior call failed
Execution halted

CHECK results for xcms on teran2

Summary

Command output

Installation output

Tests output

Example timings