Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	869
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BUILD results for pathview on teran2

To the developers/maintainers of the pathview package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: pathview

Version: 1.47.0

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data pathview

StartedAt: 2025-03-02 07:10:16 -0500 (Sun, 02 Mar 2025)

EndedAt: 2025-03-02 07:10:42 -0500 (Sun, 02 Mar 2025)

EllapsedTime: 26.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data pathview
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* checking for file ‘pathview/DESCRIPTION’ ... OK
* preparing ‘pathview’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pathview.Rnw’ using Sweave

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Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
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Info: Downloading xml files for hsa04110, 1/1 pathways..
Info: Downloading png files for hsa04110, 1/1 pathways..
'select()' returned 1:1 mapping between keys and columns
Info: Working in directory /tmp/Rtmpbub21r/Rbuild31eff629a2aa94/pathview/vignettes
Info: Writing image file hsa04110.gse16873.png
'select()' returned 1:1 mapping between keys and columns
Info: Working in directory /tmp/Rtmpbub21r/Rbuild31eff629a2aa94/pathview/vignettes
Info: Writing image file hsa04110.gse16873.2layer.png
'select()' returned 1:1 mapping between keys and columns
Warning: reconcile groups sharing member nodes!
*** buffer overflow detected ***: terminated
Aborted (core dumped)