Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-03-26 11:44 -0400 (Wed, 26 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4783
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4552
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4581
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4533
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4463
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1479/2315HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openCyto 2.19.1  (landing page)
Mike Jiang
Snapshot Date: 2025-03-25 13:40 -0400 (Tue, 25 Mar 2025)
git_url: https://git.bioconductor.org/packages/openCyto
git_branch: devel
git_last_commit: 7ba4d05
git_last_commit_date: 2025-03-20 14:46:24 -0400 (Thu, 20 Mar 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for openCyto on palomino7

To the developers/maintainers of the openCyto package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/openCyto.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: openCyto
Version: 2.19.1
Command: chmod a+r openCyto -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data openCyto
StartedAt: 2025-03-25 20:48:28 -0400 (Tue, 25 Mar 2025)
EndedAt: 2025-03-25 20:56:14 -0400 (Tue, 25 Mar 2025)
EllapsedTime: 465.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r openCyto -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data openCyto
###
##############################################################################
##############################################################################


* checking for file 'openCyto/DESCRIPTION' ... OK
* preparing 'openCyto':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HowToAutoGating.Rmd' using rmarkdown
--- finished re-building 'HowToAutoGating.Rmd'

--- re-building 'HowToWriteCSVTemplate.Rmd' using rmarkdown
--- finished re-building 'HowToWriteCSVTemplate.Rmd'

--- re-building 'openCytoVignette.Rmd' using knitr
Error: processing vignette 'openCytoVignette.Rmd' failed with diagnostics:
Detected yes/no in YAML(openCytoVignette.md). Please replace them with true/false.
--- failed re-building 'openCytoVignette.Rmd'

SUMMARY: processing the following file failed:
  'openCytoVignette.Rmd'

Error: Vignette re-building failed.
Execution halted