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This page was generated on 2025-03-22 11:46 -0400 (Sat, 22 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4777
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4547
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4576
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4528
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4458
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 770/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gaga 2.53.1  (landing page)
David Rossell
Snapshot Date: 2025-03-21 13:40 -0400 (Fri, 21 Mar 2025)
git_url: https://git.bioconductor.org/packages/gaga
git_branch: devel
git_last_commit: 0c4c578
git_last_commit_date: 2025-02-26 03:49:12 -0400 (Wed, 26 Feb 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  


INSTALL results for gaga on kunpeng2

To the developers/maintainers of the gaga package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaga.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: gaga
Version: 2.53.1
Command: /home/biocbuild/R/R/bin/R CMD INSTALL gaga
StartedAt: 2025-03-21 19:25:56 -0000 (Fri, 21 Mar 2025)
EndedAt: 2025-03-21 19:26:15 -0000 (Fri, 21 Mar 2025)
EllapsedTime: 19.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL gaga
###
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##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘gaga’ ...
** this is package ‘gaga’ version ‘2.53.1’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c cseqdesma.c -o cseqdesma.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c cstat.c -o cstat.o
cstat.c: In function ‘free_vector’:
cstat.c:666:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress]
  666 |         if( (v+nl) != NULL ) free((char  *) (v+nl));
      |                    ^~
cstat.c: In function ‘free_dvector’:
cstat.c:672:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 8)’ must not be NULL [-Waddress]
  672 |         if( (v+nl) != NULL ) free((char  *) (v+nl));
      |                    ^~
cstat.c: In function ‘free_ivector’:
cstat.c:678:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress]
  678 |         if( (v+nl) != NULL ) free((char  *) (v+nl));
      |                    ^~
cstat.c: In function ‘free_dmatrix’:
cstat.c:686:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 8)’ must not be NULL [-Waddress]
  686 |         for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
      |                                               ^~
cstat.c:688:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress]
  688 |         if( (m+nrl) != NULL ) free((char  *) (m+nrl));
      |                     ^~
cstat.c: In function ‘free_imatrix’:
cstat.c:696:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 4)’ must not be NULL [-Waddress]
  696 |         for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
      |                                               ^~
cstat.c:698:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress]
  698 |         if( (m+nrl) != NULL ) free((char  *) (m+nrl));
      |                     ^~
cstat.c: At top level:
cstat.c:22:19: warning: ‘css_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$";
      |                   ^~~~~~~~~~~~~
cstat.c:21:19: warning: ‘vector_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   21 | static const char vector_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~~~
cstat.c:20:19: warning: ‘nrutil_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   20 | static const char nrutil_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~~~
cstat.c:19:19: warning: ‘mess_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   19 | static const char mess_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~
cstat.c:18:19: warning: ‘interface_c_sccs_id’ defined but not used [-Wunused-const-variable=]
   18 | static const char interface_c_sccs_id[] = "%W%";
      |                   ^~~~~~~~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-gaga/00new/gaga/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gaga)