Multiple platform build/check report for BioC 3.21 - BUILD results for cTRAP on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4779
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4550
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4578
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4530
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4461
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for cTRAP on kunpeng2

To the developers/maintainers of the cTRAP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cTRAP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: cTRAP

Version: 1.25.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cTRAP

StartedAt: 2025-03-23 22:03:24 -0000 (Sun, 23 Mar 2025)

EndedAt: 2025-03-23 22:04:26 -0000 (Sun, 23 Mar 2025)

EllapsedTime: 62.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cTRAP
###
##############################################################################
##############################################################################


* checking for file ‘cTRAP/DESCRIPTION’ ... OK
* preparing ‘cTRAP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cTRAP.Rmd’ using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE92742&format=file&file=GSE92742_Broad_LINCS_sig_info.txt.gz'
Content type 'application/octet-stream' length 11124404 bytes (10.6 MB)
================================================
downloaded 10.3 MB


Quitting from cTRAP.Rmd:110-124 [CMap metadata conditions]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! download from 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE92742&format=file&file=GSE92742_Broad_LINCS_sig_info.txt.gz' failed
---
Backtrace:
    ▆
 1. └─cTRAP::loadCMapData("cmapMetadata.txt", type = "metadata")
 2.   └─cTRAP:::loadCMapMetadata(file, nas)
 3.     └─cTRAP:::downloadIfNotFound(link, file)
 4.       └─utils::download.file(link, file, mode = mode)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'cTRAP.Rmd' failed with diagnostics:
download from 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE92742&format=file&file=GSE92742_Broad_LINCS_sig_info.txt.gz' failed
--- failed re-building ‘cTRAP.Rmd’

SUMMARY: processing the following file failed:
  ‘cTRAP.Rmd’

Error: Vignette re-building failed.
Execution halted