Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCDEFGHIJKLMNOPQRST[U]VWXYZ

This page was generated on 2025-03-25 11:43 -0400 (Tue, 25 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4782
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4552
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4581
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4533
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4463
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2252/2315HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UPDhmm 1.3.0  (landing page)
Marta Sevilla
Snapshot Date: 2025-03-24 13:40 -0400 (Mon, 24 Mar 2025)
git_url: https://git.bioconductor.org/packages/UPDhmm
git_branch: devel
git_last_commit: 025c593
git_last_commit_date: 2024-10-29 11:29:56 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for UPDhmm on palomino7

To the developers/maintainers of the UPDhmm package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UPDhmm.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: UPDhmm
Version: 1.3.0
Command: chmod a+r UPDhmm -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data UPDhmm
StartedAt: 2025-03-24 22:32:10 -0400 (Mon, 24 Mar 2025)
EndedAt: 2025-03-24 22:32:44 -0400 (Mon, 24 Mar 2025)
EllapsedTime: 33.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r UPDhmm -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data UPDhmm
###
##############################################################################
##############################################################################


* checking for file 'UPDhmm/DESCRIPTION' ... OK
* preparing 'UPDhmm':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'UPDhmm.Rmd' using knitr
[W::bcf_hdr_check_sanity] GL should be declared as Number=G
Error: processing vignette 'UPDhmm.Rmd' failed with diagnostics:
Detected yes/no in YAML(UPDhmm.md). Please replace them with true/false.
--- failed re-building 'UPDhmm.Rmd'

SUMMARY: processing the following file failed:
  'UPDhmm.Rmd'

Error: Vignette re-building failed.
Execution halted