Multiple platform build/check report for BioC 3.21 - BUILD results for UCSC.utils on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4783
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4552
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4581
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4533
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4463
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for UCSC.utils on kjohnson3

To the developers/maintainers of the UCSC.utils package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UCSC.utils.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: UCSC.utils

Version: 1.3.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils

StartedAt: 2025-03-26 17:51:08 -0400 (Wed, 26 Mar 2025)

EndedAt: 2025-03-26 17:51:12 -0400 (Wed, 26 Mar 2025)

EllapsedTime: 4.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils
###
##############################################################################
##############################################################################


* checking for file ‘UCSC.utils/DESCRIPTION’ ... OK
* preparing ‘UCSC.utils’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UCSC.utils.Rmd’ using rmarkdown

Quitting from UCSC.utils.Rmd:75-78 [fetch_UCSC_track_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.check_response_status()`:
! [HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or
  https://api.genome.ucsc.edu is down?)
---
Backtrace:
    ▆
 1. └─UCSC.utils::fetch_UCSC_track_data("mm9", "cytoBandIdeo")
 2.   └─UCSC.utils:::API_get_track_data(genome, primary_table, api.url = api.url)
 3.     └─UCSC.utils:::.query_API(...)
 4.       └─UCSC.utils:::.check_response_status(response, fallback_errmsg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'UCSC.utils.Rmd' failed with diagnostics:
[HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or
  https://api.genome.ucsc.edu is down?)
--- failed re-building ‘UCSC.utils.Rmd’

SUMMARY: processing the following file failed:
  ‘UCSC.utils.Rmd’

Error: Vignette re-building failed.
Execution halted