Multiple platform build/check report for BioC 3.21 - BUILD results for SimBu on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4782
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4552
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4581
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4533
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4463
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SimBu on palomino7

To the developers/maintainers of the SimBu package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SimBu.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SimBu

Version: 1.9.0

Command: chmod a+r SimBu -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SimBu

StartedAt: 2025-03-24 21:58:55 -0400 (Mon, 24 Mar 2025)

EndedAt: 2025-03-24 22:00:02 -0400 (Mon, 24 Mar 2025)

EllapsedTime: 66.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r SimBu -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SimBu
###
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* checking for file 'SimBu/DESCRIPTION' ... OK
* preparing 'SimBu':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'SimBu.Rmd' using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Getting started", and the latter is "Getting started with SimBu". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building 'SimBu.Rmd'

--- re-building 'sfaira_vignette.Rmd' using rmarkdown
--- finished re-building 'sfaira_vignette.Rmd'

--- re-building 'simulator_scaling_factors.Rmd' using rmarkdown
--- finished re-building 'simulator_scaling_factors.Rmd'

--- re-building 'simulator_input_output.Rmd' using knitr
Error: processing vignette 'simulator_input_output.Rmd' failed with diagnostics:
Detected yes/no in YAML(simulator_input_output.md). Please replace them with true/false.
--- failed re-building 'simulator_input_output.Rmd'

SUMMARY: processing the following file failed:
  'simulator_input_output.Rmd'

Error: Vignette re-building failed.
Execution halted