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This page was generated on 2025-03-24 11:48 -0400 (Mon, 24 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" 4779
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" 4550
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4578
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" 4530
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2100/2313HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SUITOR 1.9.0  (landing page)
Bill Wheeler
Snapshot Date: 2025-03-23 13:40 -0400 (Sun, 23 Mar 2025)
git_url: https://git.bioconductor.org/packages/SUITOR
git_branch: devel
git_last_commit: 293c905
git_last_commit_date: 2024-10-29 11:12:00 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

INSTALL results for SUITOR on kunpeng2

To the developers/maintainers of the SUITOR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SUITOR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: SUITOR
Version: 1.9.0
Command: /home/biocbuild/R/R/bin/R CMD INSTALL SUITOR
StartedAt: 2025-03-23 19:23:50 -0000 (Sun, 23 Mar 2025)
EndedAt: 2025-03-23 19:24:15 -0000 (Sun, 23 Mar 2025)
EllapsedTime: 25.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL SUITOR
###
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##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘SUITOR’ ...
** this is package ‘SUITOR’ version ‘1.9.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c SUITOR_init.c -o SUITOR_init.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c source.c -o source.o
source.c: In function ‘dVec_alloc’:
source.c:166:17: warning: old-style function definition [-Wold-style-definition]
  166 | static double * dVec_alloc(n, initFlag, initVal)
      |                 ^~~~~~~~~~
source.c: In function ‘iVec_alloc’:
source.c:185:14: warning: old-style function definition [-Wold-style-definition]
  185 | static int * iVec_alloc(n, initFlag, initVal)
      |              ^~~~~~~~~~
source.c: In function ‘cVec_alloc’:
source.c:203:15: warning: old-style function definition [-Wold-style-definition]
  203 | static char * cVec_alloc(n, initFlag, initVal)
      |               ^~~~~~~~~~
source.c: In function ‘copy_dVec’:
source.c:222:13: warning: old-style function definition [-Wold-style-definition]
  222 | static void copy_dVec(v, n, ret)
      |             ^~~~~~~~~
source.c: In function ‘matrixMult’:
source.c:233:13: warning: old-style function definition [-Wold-style-definition]
  233 | static void matrixMult(m1, m1_nr, m1_nc, m2, m2_nc, ret)
      |             ^~~~~~~~~~
source.c: In function ‘which_max’:
source.c:256:12: warning: old-style function definition [-Wold-style-definition]
  256 | static int which_max(v, n)
      |            ^~~~~~~~~
source.c: In function ‘which_max_cols’:
source.c:280:13: warning: old-style function definition [-Wold-style-definition]
  280 | static void which_max_cols(mat, nr, nc, ret)
      |             ^~~~~~~~~~~~~~
source.c: In function ‘update_cons’:
source.c:292:12: warning: old-style function definition [-Wold-style-definition]
  292 | static int update_cons(cons, cons_len, index, nc)
      |            ^~~~~~~~~~~
source.c: In function ‘myStopFun’:
source.c:323:12: warning: old-style function definition [-Wold-style-definition]
  323 | static int myStopFun(cons, cons_len, inc, hMat, hnr, hnc, maxIndex)
      |            ^~~~~~~~~
source.c: In function ‘get_runif_vec’:
source.c:348:13: warning: old-style function definition [-Wold-style-definition]
  348 | static void get_runif_vec(v, n, a, b)
      |             ^~~~~~~~~~~~~
source.c: In function ‘get_idxMat0’:
source.c:359:12: warning: old-style function definition [-Wold-style-definition]
  359 | static int get_idxMat0(idx, nr, nc, k, kfold)
      |            ^~~~~~~~~~~
source.c: In function ‘loglike’:
source.c:385:15: warning: old-style function definition [-Wold-style-definition]
  385 | static double loglike(input, log_input, input_k_hat, idxMat, delta_denom, len, which_idx)
      |               ^~~~~~~
source.c: In function ‘replaceZeroVal_dVec’:
source.c:416:13: warning: old-style function definition [-Wold-style-definition]
  416 | static void replaceZeroVal_dVec(v, n, minval)
      |             ^~~~~~~~~~~~~~~~~~~
source.c: In function ‘get_delta_denom’:
source.c:428:15: warning: old-style function definition [-Wold-style-definition]
  428 | static double get_delta_denom(v, n)
      |               ^~~~~~~~~~~~~~~
source.c: In function ‘get_max’:
source.c:444:15: warning: old-style function definition [-Wold-style-definition]
  444 | static double get_max(v, n)
      |               ^~~~~~~
source.c: In function ‘my_update_H’:
source.c:460:13: warning: old-style function definition [-Wold-style-definition]
  460 | static void my_update_H(pV, w, h, wnr, wnc, hnc)
      |             ^~~~~~~~~~~
source.c: In function ‘my_update_W’:
source.c:539:13: warning: old-style function definition [-Wold-style-definition]
  539 | static void my_update_W(pV, w, h, wnr, wnc, hnc)
      |             ^~~~~~~~~~~
source.c: In function ‘my_update_brunet’:
source.c:611:13: warning: old-style function definition [-Wold-style-definition]
  611 | static void my_update_brunet(i, x, w, h, str)
      |             ^~~~~~~~~~~~~~~~
source.c: In function ‘get_init_WH’:
source.c:636:13: warning: old-style function definition [-Wold-style-definition]
  636 | static void get_init_WH(runifVec, w, h, wlen, hlen, maxval)
      |             ^~~~~~~~~~~
source.c: In function ‘call_nmf’:
source.c:655:13: warning: old-style function definition [-Wold-style-definition]
  655 | static void call_nmf(mat, str)
      |             ^~~~~~~~
source.c: In function ‘update_x_k’:
source.c:714:13: warning: old-style function definition [-Wold-style-definition]
  714 | static void update_x_k(x_k, x_k_hat, idxMat, n)
      |             ^~~~~~~~~~
source.c: In function ‘get_median’:
source.c:838:15: warning: old-style function definition [-Wold-style-definition]
  838 | static double get_median(v, n)
      |               ^~~~~~~~~~
source.c: In function ‘get_init_x_k’:
source.c:863:13: warning: old-style function definition [-Wold-style-definition]
  863 | static void get_init_x_k(x, x_k, idxMat, nr, nc, tmpvec, minvalue)
      |             ^~~~~~~~~~~~
source.c: In function ‘get_colsums’:
source.c:916:13: warning: old-style function definition [-Wold-style-definition]
  916 | static void get_colsums(x, nr, nc, ret)
      |             ^~~~~~~~~~~
source.c: In function ‘transpose’:
source.c:934:13: warning: old-style function definition [-Wold-style-definition]
  934 | static void transpose(v, nr, nc, ret)
      |             ^~~~~~~~~
source.c: In function ‘ECM_update_h’:
source.c:949:13: warning: old-style function definition [-Wold-style-definition]
  949 | static void ECM_update_h(h1, h0, w0, x_k, hnr, hnc, wnr, wnc, xnr, xnc, vM, vN, vN2)
      |             ^~~~~~~~~~~~
source.c: In function ‘ECM_update_w’:
source.c:983:13: warning: old-style function definition [-Wold-style-definition]
  983 | static void ECM_update_w(w1, h1, w0, x_k, hnr, hnc, wnr, wnc, xnr, xnc, vM, vN, vN2)
      |             ^~~~~~~~~~~~
source.c: In function ‘ECM_alg’:
source.c:1017:12: warning: old-style function definition [-Wold-style-definition]
 1017 | static int ECM_alg(str)
      |            ^~~~~~~
source.c: In function ‘init_wh_rank’:
source.c:1093:13: warning: old-style function definition [-Wold-style-definition]
 1093 | static void init_wh_rank(str, rank)
      |             ^~~~~~~~~~~~
source.c: In function ‘suitor_main’:
source.c:1119:13: warning: old-style function definition [-Wold-style-definition]
 1119 | static void suitor_main(str)
      |             ^~~~~~~~~~~
source.c: In function ‘init_logx’:
source.c:1203:13: warning: old-style function definition [-Wold-style-definition]
 1203 | static void init_logx(x, logx, n)
      |             ^~~~~~~~~
source.c: In function ‘NMFSTR_init’:
source.c:1221:13: warning: old-style function definition [-Wold-style-definition]
 1221 | static void NMFSTR_init(str, iargs, dargs, xmat)
      |             ^~~~~~~~~~~
source.c: In function ‘NMFSTR_free’:
source.c:1311:13: warning: old-style function definition [-Wold-style-definition]
 1311 | static void NMFSTR_free(str, EMflag)
      |             ^~~~~~~~~~~
source.c: In function ‘C_call_nmf’:
source.c:1339:6: warning: old-style function definition [-Wold-style-definition]
 1339 | void C_call_nmf(mat, iargs, dargs, retW, retH)
      |      ^~~~~~~~~~
source.c: In function ‘C_call_suitor’:
source.c:1361:6: warning: old-style function definition [-Wold-style-definition]
 1361 | void C_call_suitor(mat, iargs, dargs, rankVec, kVec, ret_train, ret_test, ret_convVec, ret_EM_niterVec)
      |      ^~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o SUITOR.so SUITOR_init.o source.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-SUITOR/00new/SUITOR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SUITOR)