| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-04-01 11:47 -0400 (Tue, 01 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4787 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4557 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4586 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4538 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4523 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1348/2316 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MsBackendRawFileReader 1.13.1 (landing page) Christian Panse
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the MsBackendRawFileReader package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendRawFileReader.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: MsBackendRawFileReader |
| Version: 1.13.1 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendRawFileReader |
| StartedAt: 2025-04-01 00:31:24 -0000 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 00:32:02 -0000 (Tue, 01 Apr 2025) |
| EllapsedTime: 38.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendRawFileReader
###
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* checking for file ‘MsBackendRawFileReader/DESCRIPTION’ ... OK
* preparing ‘MsBackendRawFileReader’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MsBackendRawFileReader.Rmd’ using rmarkdown
sh: line 1: /home/biocbuild/.cache/R/rawrr/rawrrassembly/linux-x64/rawrr: cannot execute binary file: Exec format error
sh: line 1: /home/biocbuild/.cache/R/rawrr/rawrrassembly/linux-x64/rawrr: cannot execute binary file: Exec format error
sh: line 1: /home/biocbuild/.cache/R/rawrr/rawrrassembly/linux-x64/rawrr: cannot execute binary file: Exec format error
Quitting from MsBackendRawFileReader.Rmd:103-107 [backendInitializeMsBackendRawFileReader]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
3 remote errors, element index: 1, 2, 3
0 unevaluated and other errors
first remote error:
Error in if (rvs != "No RAW file specified!") {: argument is of length zero
---
Backtrace:
▆
1. ├─Spectra::backendInitialize(...)
2. └─Spectra::backendInitialize(...)
3. └─MsBackendRawFileReader (local) .local(object, ...)
4. ├─base::do.call(...)
5. ├─BiocParallel::bplapply(...)
6. └─BiocParallel::bplapply(...)
7. └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MsBackendRawFileReader.Rmd' failed with diagnostics:
BiocParallel errors
3 remote errors, element index: 1, 2, 3
0 unevaluated and other errors
first remote error:
Error in if (rvs != "No RAW file specified!") {: argument is of length zero
--- failed re-building ‘MsBackendRawFileReader.Rmd’
SUMMARY: processing the following file failed:
‘MsBackendRawFileReader.Rmd’
Error: Vignette re-building failed.
Execution halted