| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-04 11:46 -0500 (Sat, 04 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4756 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4475 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4435 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4390 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4383 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 622/2275 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EBSeq 2.5.0 (landing page) Xiuyu Ma
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | OK | ERROR | ERROR | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | ERROR | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | OK | ERROR | ERROR | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | OK | ERROR | ||||||||||
|
To the developers/maintainers of the EBSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: EBSeq |
| Version: 2.5.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:EBSeq.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings EBSeq_2.5.0.tar.gz |
| StartedAt: 2025-01-04 05:55:13 -0000 (Sat, 04 Jan 2025) |
| EndedAt: 2025-01-04 05:55:17 -0000 (Sat, 04 Jan 2025) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: EBSeq.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:EBSeq.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings EBSeq_2.5.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/EBSeq.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EBSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EBSeq’ version ‘2.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EBSeq’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.21-bioc/meat/EBSeq.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.21-bioc/meat/EBSeq.Rcheck/00check.log’
for details.
EBSeq.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL EBSeq
###
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##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’
* installing *source* package ‘EBSeq’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++11
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++11 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c Rexport.cpp -o Rexport.o
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:17,
from agglomerativeClustering.hpp:9,
from negativeBinomial.hpp:5,
from Rexport.cpp:11:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/config.hpp:28:6: warning: #warning "Boost.Math requires C++14" [-Wcpp]
28 | # warning "Boost.Math requires C++14"
| ^~~~~~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/Core:214,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/Dense:1,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/RcppEigenForward.h:28,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/RcppEigen.h:25,
from Rexport.cpp:2:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::pload(const typename unpacket_traits<T>::type*) [with Packet = eigen_packet_wrapper<int, 2>; typename unpacket_traits<T>::type = signed char]’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/src/Core/arch/NEON/PacketMath.h:1671:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper<int, 2>’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess]
1671 | memcpy(&res, from, sizeof(Packet4c));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/Core:172:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper<int, 2>’} declared here
159 | struct eigen_packet_wrapper
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/src/Core/arch/NEON/PacketMath.h: In function ‘Packet Eigen::internal::ploadu(const typename unpacket_traits<T>::type*) [with Packet = eigen_packet_wrapper<int, 2>; typename unpacket_traits<T>::type = signed char]’:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/src/Core/arch/NEON/PacketMath.h:1716:9: warning: ‘void* memcpy(void*, const void*, size_t)’ copying an object of non-trivial type ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper<int, 2>’} from an array of ‘const int8_t’ {aka ‘const signed char’} [-Wclass-memaccess]
1716 | memcpy(&res, from, sizeof(Packet4c));
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RcppEigen/include/Eigen/src/Core/GenericPacketMath.h:159:8: note: ‘Eigen::internal::Packet4c’ {aka ‘struct Eigen::internal::eigen_packet_wrapper<int, 2>’} declared here
159 | struct eigen_packet_wrapper
| ^~~~~~~~~~~~~~~~~~~~
In file included from Rexport.cpp:5:
partition.hpp: In static member function ‘static std::vector<std::vector<int> > EBS::partition::Part(int)’:
partition.hpp:26:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
26 | for(int j = 0;j < L; ++j){
| ~~^~~
partition.hpp: In static member function ‘static std::vector<std::vector<int> > EBS::partition::monoPart(int)’:
partition.hpp:53:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
53 | for(int j = 0;j < L; ++j){
| ~~^~~
partition.hpp: In static member function ‘static std::vector<int> EBS::partition::reorder(std::vector<int>&)’:
partition.hpp:155:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
155 | for(int j = 0; j < K; j++)
| ~~^~~
partition.hpp: In static member function ‘static EBS::COUNTS EBS::partition::toMatrix(std::vector<int>&)’:
partition.hpp:208:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
208 | for(int j = 0; j < K; j++)
| ~~^~~
In file included from Rexport.cpp:7:
aggregate.hpp: In static member function ‘static EBS::COUNTS EBS::aggregate::sum(Eigen::VectorXd&, EBS::CLUSINFO&)’:
aggregate.hpp:24:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
24 | for(auto i = 0; i < K; i++)
| ~~^~~
aggregate.hpp: In static member function ‘static EBS::COUNTS EBS::aggregate::sum(EBS::COUNTS&, EBS::CLUSINFO&)’:
aggregate.hpp:43:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
43 | for(auto i = 0; i < K; i++)
| ~~^~~
aggregate.hpp: In static member function ‘static EBS::COUNTS EBS::aggregate::sum(EBS::COUNTS&, EBS::CLUSINFO&, Eigen::VectorXd&)’:
aggregate.hpp:62:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
62 | for(auto i = 0; i < K; i++)
| ~~^~~
aggregate.hpp: In static member function ‘static EBS::COUNTS EBS::aggregate::groupMean(EBS::COUNTS, EBS::CLUSINFO&)’:
aggregate.hpp:77:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
77 | for(auto i = 0; i < K; i++)
| ~~^~~
aggregate.hpp: In static member function ‘static EBS::COUNTS EBS::aggregate::groupVar(EBS::COUNTS&, EBS::COUNTS&, EBS::CLUSINFO&)’:
aggregate.hpp:101:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
101 | for(int i = 0; i < K; i++)
| ~~^~~
aggregate.hpp: In static member function ‘static EBS::COUNTS EBS::aggregate::groupVar(EBS::COUNTS&, EBS::COUNTS&, EBS::CLUSINFO&, Eigen::VectorXd&)’:
aggregate.hpp:122:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
122 | for(int i = 0; i < K; i++)
| ~~^~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/series.hpp:17,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:18:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp: At global scope:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:208:12: error: ‘is_final’ has not been declared in ‘std’
208 | using std::is_final;
| ^~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:259:12: error: ‘remove_cv_t’ has not been declared in ‘std’
259 | using std::remove_cv_t;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:261:12: error: ‘remove_const_t’ has not been declared in ‘std’
261 | using std::remove_const_t;
| ^~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:263:12: error: ‘remove_volatile_t’ has not been declared in ‘std’
263 | using std::remove_volatile_t;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:265:12: error: ‘add_cv_t’ has not been declared in ‘std’
265 | using std::add_cv_t;
| ^~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:267:12: error: ‘add_const_t’ has not been declared in ‘std’
267 | using std::add_const_t;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:269:12: error: ‘add_volatile_t’ has not been declared in ‘std’
269 | using std::add_volatile_t;
| ^~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:273:12: error: ‘remove_reference_t’ has not been declared in ‘std’
273 | using std::remove_reference_t;
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:275:12: error: ‘add_lvalue_reference_t’ has not been declared in ‘std’
275 | using std::add_lvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:277:12: error: ‘add_rvalue_reference_t’ has not been declared in ‘std’
277 | using std::add_rvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:281:12: error: ‘remove_pointer_t’ has not been declared in ‘std’
281 | using std::remove_pointer_t;
| ^~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:283:12: error: ‘add_pointer_t’ has not been declared in ‘std’
283 | using std::add_pointer_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:287:12: error: ‘make_signed_t’ has not been declared in ‘std’
287 | using std::make_signed_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:289:12: error: ‘make_unsigned_t’ has not been declared in ‘std’
289 | using std::make_unsigned_t;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:293:12: error: ‘remove_extent_t’ has not been declared in ‘std’
293 | using std::remove_extent_t;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:295:12: error: ‘remove_all_extents_t’ has not been declared in ‘std’
295 | using std::remove_all_extents_t;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:299:12: error: ‘decay_t’ has not been declared in ‘std’
299 | using std::decay_t;
| ^~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:301:12: error: ‘enable_if_t’ has not been declared in ‘std’
301 | using std::enable_if_t;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:303:12: error: ‘conditional_t’ has not been declared in ‘std’
303 | using std::conditional_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:305:12: error: ‘common_type_t’ has not been declared in ‘std’
305 | using std::common_type_t;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:307:12: error: ‘underlying_type_t’ has not been declared in ‘std’
307 | using std::underlying_type_t;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:315:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
315 | BOOST_MATH_INLINE_CONSTEXPR bool is_void_v = boost::math::is_void<T>::value;
| ^~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:318:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
318 | BOOST_MATH_INLINE_CONSTEXPR bool is_null_pointer_v = boost::math::is_null_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:321:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
321 | BOOST_MATH_INLINE_CONSTEXPR bool is_integral_v = boost::math::is_integral<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:324:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
324 | BOOST_MATH_INLINE_CONSTEXPR bool is_floating_point_v = boost::math::is_floating_point<T>::value;
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:327:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
327 | BOOST_MATH_INLINE_CONSTEXPR bool is_array_v = boost::math::is_array<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:330:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
330 | BOOST_MATH_INLINE_CONSTEXPR bool is_enum_v = boost::math::is_enum<T>::value;
| ^~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:333:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
333 | BOOST_MATH_INLINE_CONSTEXPR bool is_union_v = boost::math::is_union<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:336:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
336 | BOOST_MATH_INLINE_CONSTEXPR bool is_class_v = boost::math::is_class<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:339:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
339 | BOOST_MATH_INLINE_CONSTEXPR bool is_function_v = boost::math::is_function<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:342:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
342 | BOOST_MATH_INLINE_CONSTEXPR bool is_pointer_v = boost::math::is_pointer<T>::value;
| ^~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:345:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
345 | BOOST_MATH_INLINE_CONSTEXPR bool is_lvalue_reference_v = boost::math::is_lvalue_reference<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:348:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
348 | BOOST_MATH_INLINE_CONSTEXPR bool is_rvalue_reference_v = boost::math::is_rvalue_reference<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:351:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
351 | BOOST_MATH_INLINE_CONSTEXPR bool is_member_object_pointer_v = boost::math::is_member_object_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:354:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
354 | BOOST_MATH_INLINE_CONSTEXPR bool is_member_function_pointer_v = boost::math::is_member_function_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:357:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
357 | BOOST_MATH_INLINE_CONSTEXPR bool is_fundamental_v = boost::math::is_fundamental<T>::value;
| ^~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:360:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
360 | BOOST_MATH_INLINE_CONSTEXPR bool is_arithmetic_v = boost::math::is_arithmetic<T>::value;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:363:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
363 | BOOST_MATH_INLINE_CONSTEXPR bool is_scalar_v = boost::math::is_scalar<T>::value;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:366:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
366 | BOOST_MATH_INLINE_CONSTEXPR bool is_object_v = boost::math::is_object<T>::value;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:369:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
369 | BOOST_MATH_INLINE_CONSTEXPR bool is_compound_v = boost::math::is_compound<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:372:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
372 | BOOST_MATH_INLINE_CONSTEXPR bool is_reference_v = boost::math::is_reference<T>::value;
| ^~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:375:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
375 | BOOST_MATH_INLINE_CONSTEXPR bool is_member_pointer_v = boost::math::is_member_pointer<T>::value;
| ^~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:378:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
378 | BOOST_MATH_INLINE_CONSTEXPR bool is_const_v = boost::math::is_const<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:381:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
381 | BOOST_MATH_INLINE_CONSTEXPR bool is_volatile_v = boost::math::is_volatile<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:384:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
384 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivial_v = boost::math::is_trivial<T>::value;
| ^~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:387:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
387 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_copyable_v = boost::math::is_trivially_copyable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:390:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
390 | BOOST_MATH_INLINE_CONSTEXPR bool is_standard_layout_v = boost::math::is_standard_layout<T>::value;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:393:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
393 | BOOST_MATH_INLINE_CONSTEXPR bool is_empty_v = boost::math::is_empty<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:396:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
396 | BOOST_MATH_INLINE_CONSTEXPR bool is_polymorphic_v = boost::math::is_polymorphic<T>::value;
| ^~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:399:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
399 | BOOST_MATH_INLINE_CONSTEXPR bool is_abstract_v = boost::math::is_abstract<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:60: error: ‘is_final’ is not a member of ‘boost::math’; did you mean ‘is_final_v’?
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~~~~
| is_final_v
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:70: error: expected primary-expression before ‘>’ token
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:73: error: ‘::value’ has not been declared
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:402:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v = boost::math::is_final<T>::value;
| ^~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:405:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
405 | BOOST_MATH_INLINE_CONSTEXPR bool is_signed_v = boost::math::is_signed<T>::value;
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:408:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
408 | BOOST_MATH_INLINE_CONSTEXPR bool is_unsigned_v = boost::math::is_unsigned<T>::value;
| ^~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:411:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
411 | BOOST_MATH_INLINE_CONSTEXPR bool is_constructible_v = boost::math::is_constructible<T, Args...>::value;
| ^~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:414:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
414 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_constructible_v = boost::math::is_trivially_constructible<T, Args...>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:417:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
417 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_constructible_v = boost::math::is_nothrow_constructible<T, Args...>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:420:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
420 | BOOST_MATH_INLINE_CONSTEXPR bool is_default_constructible_v = boost::math::is_default_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:423:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
423 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_default_constructible_v = boost::math::is_trivially_default_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:426:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
426 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_default_constructible_v = boost::math::is_nothrow_default_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:429:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
429 | BOOST_MATH_INLINE_CONSTEXPR bool is_copy_constructible_v = boost::math::is_copy_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:432:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
432 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_copy_constructible_v = boost::math::is_trivially_copy_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:435:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
435 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_copy_constructible_v = boost::math::is_nothrow_copy_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:438:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
438 | BOOST_MATH_INLINE_CONSTEXPR bool is_move_constructible_v = boost::math::is_move_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:441:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
441 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_move_constructible_v = boost::math::is_trivially_move_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:444:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
444 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_move_constructible_v = boost::math::is_nothrow_move_constructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:447:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
447 | BOOST_MATH_INLINE_CONSTEXPR bool is_assignable_v = boost::math::is_assignable<T, U>::value;
| ^~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:450:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
450 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_assignable_v = boost::math::is_trivially_assignable<T, U>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:453:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
453 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_assignable_v = boost::math::is_nothrow_assignable<T, U>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:456:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
456 | BOOST_MATH_INLINE_CONSTEXPR bool is_copy_assignable_v = boost::math::is_copy_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:459:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
459 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_copy_assignable_v = boost::math::is_trivially_copy_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:462:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
462 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_copy_assignable_v = boost::math::is_nothrow_copy_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:465:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
465 | BOOST_MATH_INLINE_CONSTEXPR bool is_move_assignable_v = boost::math::is_move_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:468:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
468 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_move_assignable_v = boost::math::is_trivially_move_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:471:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
471 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_move_assignable_v = boost::math::is_nothrow_move_assignable<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:474:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
474 | BOOST_MATH_INLINE_CONSTEXPR bool is_destructible_v = boost::math::is_destructible<T>::value;
| ^~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:477:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
477 | BOOST_MATH_INLINE_CONSTEXPR bool is_trivially_destructible_v = boost::math::is_trivially_destructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:480:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
480 | BOOST_MATH_INLINE_CONSTEXPR bool is_nothrow_destructible_v = boost::math::is_nothrow_destructible<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:483:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
483 | BOOST_MATH_INLINE_CONSTEXPR bool has_virtual_destructor_v = boost::math::has_virtual_destructor<T>::value;
| ^~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:486:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
486 | BOOST_MATH_INLINE_CONSTEXPR bool is_same_v = boost::math::is_same<T, U>::value;
| ^~~~~~~~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/type_traits.hpp:489:34: warning: variable templates only available with ‘-std=c++14’ or ‘-std=gnu++14’ [-Wc++14-extensions]
489 | BOOST_MATH_INLINE_CONSTEXPR bool is_base_of_v = boost::math::is_base_of<T, U>::value;
| ^~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:21:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/tools/promotion.hpp:90:36: error: ‘common_type_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘common_type’?
90 | using type = boost::math::common_type_t<T1, T2, float>;
| ^~~~~~~~~~~~~
| common_type
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:30:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:324:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
324 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<int, T>, int>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:331:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
331 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<int, T>, int>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:339:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
339 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long, T>, long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:346:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
346 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<!boost::math::is_constructible_v<long, T>, long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:354:44: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
354 | BOOST_MATH_GPU_ENABLED inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:361:53: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:361:64: error: expected unqualified-id before ‘<’ token
361 | BOOST_MATH_GPU_ENABLED inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:369:76: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
369 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline boost::math::enable_if_t<boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:376:85: error: ‘enable_if_t’ in namespace ‘boost::math’ does not name a template type; did you mean ‘enable_if’?
376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^~~~~~~~~~~
| enable_if
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/trunc.hpp:376:96: error: expected unqualified-id before ‘<’ token
376 | BOOST_MATH_GPU_ENABLED [[deprecated("Use llconvert")]] inline typename boost::math::enable_if_t<!boost::math::is_constructible_v<long long, T>, long long>
| ^
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/detail/polygamma.hpp:24,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/polygamma.hpp:15,
from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:42:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/pow.hpp:126:79: error: redeclaration ‘constexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T, const Policy&)’ differs in ‘constexpr’ from previous declaration
126 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base, const Policy& policy)
| ^~~
In file included from /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/gamma.hpp:28:
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:1173:79: note: previous declaration ‘boost::math::tools::promote_args_t<T> boost::math::pow(T, const Policy&)’
1173 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base, const Policy& policy);
| ^~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/pow.hpp:133:79: error: redeclaration ‘constexpr typename boost::math::tools::promote_args<T2>::type boost::math::pow(T)’ differs in ‘constexpr’ from previous declaration
133 | BOOST_MATH_GPU_ENABLED constexpr inline typename tools::promote_args<T>::type pow(T base)
| ^~~
/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:1176:79: note: previous declaration ‘boost::math::tools::promote_args_t<T> boost::math::pow(T)’
1176 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR tools::promote_args_t<T> pow(T base);
| ^~~
negativeBinomial.hpp: In constructor ‘EBS::NB::NB(EBS::COUNTS&, std::vector<int>&, Eigen::VectorXd&, std::vector<std::vector<int> >&)’:
negativeBinomial.hpp:32:38: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
32 | if(scRNAexpMatrix.cols() > nk)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~
negativeBinomial.hpp:59:41: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
59 | for(size_t j = 0; j < _mean.cols(); j++)
| ~~^~~~~~~~~~~~~~
negativeBinomial.hpp:93:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
93 | for(size_t iter = 0; iter < _sum.rows(); iter++)
| ~~~~~^~~~~~~~~~~~~
negativeBinomial.hpp:115:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
115 | for(size_t iter = 0; iter < _sum.rows(); iter++)
| ~~~~~^~~~~~~~~~~~~
negativeBinomial.hpp:160:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Array<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
160 | for(size_t useRow = 0; useRow < use.size(); useRow++)
| ~~~~~~~^~~~~~~~~~~~
negativeBinomial.hpp:180:43: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::Matrix<double, -1, 1> > >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > > >::Index’ {aka ‘long int’} [-Wsign-compare]
180 | for(size_t iter = 0; iter < phi.size(); iter++)
| ~~~~~^~~~~~~~~~~~
negativeBinomial.hpp: In member function ‘void EBS::NB::init(EBS::Float, Eigen::VectorXd, std::vector<int>, std::vector<double>, int, EBS::Float, EBS::Float, EBS::Float, int)’:
negativeBinomial.hpp:242:20: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
242 | if(_ng < _sum.rows())
| ~~~~^~~~~~~~~~~~~
negativeBinomial.hpp:250:43: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
250 | if(_isoLabel[pos] == lab)
negativeBinomial.hpp: In member function ‘void EBS::NB::equalHandle(std::vector<bool>&, std::vector<double>&, Eigen::VectorXd&, Eigen::VectorXd&, EBS::Float&, EBS::Float&, EBS::Float&, EBS::Float&, std::vector<int>&, int, int)’:
negativeBinomial.hpp:803:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
803 | while(pos < baseBit.size())
| ~~~~^~~~~~~~~~~~~~~~
Rexport.cpp: In function ‘SEXPREC* EBSeq(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
Rexport.cpp:84:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
84 | for(size_t i = 0; i < nr; i++){
| ~~^~~~
Rexport.cpp:85:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
85 | for(size_t j = 0; j < nk; j++){
| ~~^~~~
Rexport.cpp:150:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
150 | for (size_t ri = 0; ri < mDep.rows(); ri++)
| ~~~^~~~~~~~~~~~~
Rexport.cpp:151:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
151 | for(size_t ci = 0; ci < mDep.cols(); ci++)
| ~~~^~~~~~~~~~~~~
Rexport.cpp: In function ‘SEXPREC* EBSeqWQ(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
Rexport.cpp:275:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
275 | for (size_t ri = 0; ri < mDep.rows(); ri++)
| ~~~^~~~~~~~~~~~~
Rexport.cpp:276:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare]
276 | for(size_t ci = 0; ci < mDep.cols(); ci++)
| ~~~^~~~~~~~~~~~~
agglomerativeClustering.hpp: In instantiation of ‘static void EBS::ALGO::hclust(ROW&, ROW&, std::vector<double>&, int, int, EBS::Float, EBS::Float, EBS::Float, EBS::Float, std::vector<int>&) [with ROW = Eigen::Matrix<double, -1, 1>; EBS::Float = double]’:
negativeBinomial.hpp:818:51: required from here
818 | ALGO::hclust<Eigen::VectorXd>(cs,rs,logRatio,start,pos,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
819 | alpha,beta,th1,th2,sz);
| ~~~~~~~~~~~~~~~~~~~~~~
agglomerativeClustering.hpp:87:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
87 | for(size_t i = 0; i < counter; i++)
| ~~^~~~~~~~~
make: *** [/home/biocbuild/R/R/etc/Makeconf:204: Rexport.o] Error 1
ERROR: compilation failed for package ‘EBSeq’
* removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/EBSeq’
* restoring previous ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/EBSeq’