| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-26 11:43 -0400 (Wed, 26 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4783 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4552 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4581 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4533 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4463 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 568/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Shubham Gupta
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the DIAlignR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DIAlignR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DIAlignR |
| Version: 2.15.1 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DIAlignR.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings DIAlignR_2.15.1.tar.gz |
| StartedAt: 2025-03-26 00:58:56 -0400 (Wed, 26 Mar 2025) |
| EndedAt: 2025-03-26 01:02:58 -0400 (Wed, 26 Mar 2025) |
| EllapsedTime: 242.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: DIAlignR.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DIAlignR.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings DIAlignR_2.15.1.tar.gz
###
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/DIAlignR.Rcheck'
* using R Under development (unstable) (2025-03-01 r87860 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'DIAlignR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DIAlignR' version '2.15.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DIAlignR' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
* checking C++ specification ... NOTE
Specified C++14: please drop specification unless essential
* checking installed package size ... INFO
installed size is 12.3Mb
sub-directories of 1Mb or more:
extdata 4.0Mb
libs 1.4Mb
metabo 4.1Mb
ptms 1.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
alignTargetedRuns: no visible binding for global variable 'peptide_id'
alignTargetedRuns : <anonymous>: no visible global function definition
for '.'
alignTargetedRuns: no visible binding for global variable 'intensity'
alignToRoot4: no visible binding for global variable 'trees'
alignToRoot4: no visible binding for global variable 'precursors'
alignToRoot4: no visible binding for global variable 'intensity'
childXICs: possible error in cummax(v = cummax(ifelse(is.na(x), -Inf,
x))): unused argument (v = cummax(ifelse(is.na(x), -Inf, x)))
distMat.rSqrd : <anonymous> : <anonymous>: no visible binding for
global variable 'RT.ref'
distMat.rSqrd : <anonymous> : <anonymous>: no visible binding for
global variable 'RT.eXp'
fetchPrecursorsInfo: no visible binding for global variable
'transition_id'
fetchPrecursorsInfo: no visible global function definition for '.'
fetchPrecursorsInfo: no visible binding for global variable
'transition_group_id'
fetchTransitionsFromRun: no visible binding for global variable
'intensity'
fetchTransitionsFromRun: no visible global function definition for '.'
fetchTransitionsFromRun: no visible binding for global variable
'transition_group_id'
fetchTransitionsFromRun: no visible binding for global variable
'peak_group_rank'
fetchTransitionsFromRun: no visible global function definition for
'head'
getNativeIDs: no visible binding for global variable 'peptide_id'
getPeptideScores: no visible binding for global variable 'col2'
getPeptideScores: no visible binding for global variable 'run'
getQuery: no visible binding for global variable
'identifying.transitionPEPfilter'
getRTdf: no visible binding for global variable 'peak_group_rank'
getRTdf: no visible binding for global variable 'm_score'
getRTdf: no visible global function definition for '.'
getRTdf: no visible binding for global variable 'transition_group_id'
getRTdf: no visible binding for global variable 'RT'
getRefRun : <anonymous>: no visible binding for global variable
'pvalue'
ipfReassignFDR: no visible binding for global variable 'ref_run'
ipfReassignFDR: no visible binding for global variable 'run'
ipfReassignFDR: no visible global function definition for '.'
ipfReassignFDR: no visible binding for global variable 'i.to'
ipfReassignFDR: no visible binding for global variable 'm_score_new'
ipfReassignFDR: no visible binding for global variable 'ms2_m_score'
ipfReassignFDR: no visible binding for global variable 'm_score'
mstAlignRuns: no visible binding for global variable 'ropenms'
mstAlignRuns: no visible binding for global variable 'peptide_id'
mstAlignRuns : <anonymous>: no visible global function definition for
'.'
mstAlignRuns: no visible binding for global variable 'intensity'
mstScript1: no visible binding for global variable 'ropenms'
mstScript2: no visible binding for global variable 'fileInfo'
mstScript2: no visible binding for global variable 'peptide_id'
mstScript2: no visible binding for global variable 'features'
mstScript2 : <anonymous>: no visible global function definition for '.'
mstScript2 : <anonymous>: no visible binding for global variable
'features'
mstScript2: no visible binding for global variable 'intensity'
populateReferenceExperimentFeatureAlignmentMap: no visible binding for
global variable 'run'
populateReferenceExperimentFeatureAlignmentMap: no visible binding for
global variable 'transition_group_id'
populateReferenceExperimentFeatureAlignmentMap: no visible binding for
global variable 'feature_id'
progAlignRuns: no visible binding for global variable 'peptide_id'
progAlignRuns : <anonymous>: no visible global function definition for
'.'
progAlignRuns: no visible binding for global variable 'intensity'
progComb3: no visible binding for global variable 'precursors'
progComb3: no visible binding for global variable 'ropenms'
progSplit2: no visible binding for global variable 'trees'
progSplit2: no visible binding for global variable 'scoreFile'
progSplit2: no visible binding for global variable 'precursors'
progSplit2 : <anonymous>: no visible global function definition for '.'
progSplit2: no visible binding for global variable 'ropenms'
progSplit4: no visible binding for global variable 'precursors'
progSplit4 : <anonymous>: no visible global function definition for '.'
progSplit4: no visible binding for global variable 'intensity'
progTree1: no visible binding for global variable 'ropenms'
progTree1: no visible binding for global variable 'peptide_id'
reIntensity: no visible binding for global variable 'run'
reIntensity: no visible binding for global variable 'alignment_rank'
recalculateIntensity: no visible binding for global variable
'peptide_id'
recalculateIntensity: no visible binding for global variable
'chromatogramIndex'
script2: no visible binding for global variable 'fileInfo'
script2: no visible binding for global variable 'peptide_id'
script2 : <anonymous>: no visible global function definition for '.'
script2: no visible binding for global variable 'features'
script2: no visible binding for global variable 'globalFits'
script2: no visible binding for global variable 'RSE'
script2: no visible binding for global variable 'intensity'
setRootRank : <anonymous>: no visible global function definition for
'.'
writeOutFeatureAlignmentMap: no visible binding for global variable
'reference_feature_id'
writeOutFeatureAlignmentMap: no visible binding for global variable
'experiment_feature_id'
writeOutFeatureAlignmentMap: no visible binding for global variable
'ALIGNMENT_GROUP_ID'
writeOutFeatureAlignmentMap: no visible binding for global variable
'REFERENCE'
writeOutFeatureAlignmentMap: no visible global function definition for
'.'
writeOutFeatureAlignmentMap: no visible binding for global variable
'i.to'
writeTables: no visible binding for global variable 'peptide_id'
writeTables: no visible binding for global variable 'run'
writeTables: no visible binding for global variable 'precursor'
Undefined global functions or variables:
. ALIGNMENT_GROUP_ID REFERENCE RSE RT RT.eXp RT.ref alignment_rank
chromatogramIndex col2 experiment_feature_id feature_id features
fileInfo globalFits head i.to identifying.transitionPEPfilter
intensity m_score m_score_new ms2_m_score peak_group_rank peptide_id
precursor precursors pvalue ref_run reference_feature_id ropenms run
scoreFile transition_group_id transition_id trees
Consider adding
importFrom("datasets", "trees")
importFrom("utils", "head")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Documented arguments not in \usage in Rd file 'alignToRef.Rd':
'feature_alignment_mapping'
Documented arguments not in \usage in Rd file 'blobXICs.Rd':
'nativeId'
Documented arguments not in \usage in Rd file 'extractXIC_group2.Rd':
'mz'
Documented arguments not in \usage in Rd file 'getOswAnalytes.Rd':
'dataPath' 'filenames'
Documented arguments not in \usage in Rd file 'getOswFiles.Rd':
'dataPath' 'filenames'
Documented arguments not in \usage in Rd file 'perBatch.Rd':
'rownum'
Documented arguments not in \usage in Rd file 'readSqMassHeader.Rd':
'mzmlName'
Documented arguments not in \usage in Rd file 'setAlignmentRank.Rd':
'XICs.eXp'
Documented arguments not in \usage in Rd file 'traverseDown.Rd':
'analytes'
Documented arguments not in \usage in Rd file 'writeTables.Rd':
'filename'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
alignTargetedRuns 6.78 0.13 6.95
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
Backtrace:
▆
1. └─testthat::expect_equal(outData[[1]], expData, tolerance = 1e-04) at test_utils.R:76:13
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─data.table:::all.equal.data.table(x, y, ...)
6. ├─base::all.equal(x, y, tolerance = tolerance, ..., check.attributes = check.attributes)
7. └─bit64::all.equal.integer64(...)
8. ├─base::is.na(current)
9. └─bit64::is.na.integer64(current)
[ FAIL 7 | WARN 440 | SKIP 8 | PASS 625 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 4 NOTEs
See
'E:/biocbuild/bbs-3.21-bioc/meat/DIAlignR.Rcheck/00check.log'
for details.
DIAlignR.Rcheck/00install.out
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###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL DIAlignR
###
##############################################################################
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'DIAlignR' ...
** this is package 'DIAlignR' version '2.15.1'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
using C++14
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ChromatogramPeak.cpp -o ChromatogramPeak.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DPosition.cpp -o DPosition.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MSChromatogram.cpp -o MSChromatogram.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PeakIntegrator.cpp -o PeakIntegrator.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
from RcppExports.cpp:4:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>'
96 | class SparseMatrix
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rmain.cpp -o Rmain.o
Rmain.cpp: In function 'Rcpp::NumericVector areaIntegrator(Rcpp::List, Rcpp::List, double, double, std::string, std::string, bool, bool, int, int)':
Rmain.cpp:273:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
273 | for(int i = 0; i<vov2.size(); i++) sgolay.smoothChroms(vov2[i]);
| ~^~~~~~~~~~~~
Rmain.cpp: In function 'Rcpp::NumericMatrix sgolayCpp(Rcpp::NumericMatrix, int, int)':
Rmain.cpp:305:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
305 | for(int i = 0; i<d.size(); i++){
| ~^~~~~~~~~
Rmain.cpp: In function 'Rcpp::NumericMatrix getAlignedTimesCpp(Rcpp::List, Rcpp::List, int, int, std::string, double, std::string, std::string, const std::vector<double>&, double, double, double, bool, double, double, int, bool, double)':
Rmain.cpp:368:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
368 | for(int i = 0; i<intensity1.size(); i++){
| ~^~~~~~~~~~~~~~~~~~
Rmain.cpp: In function 'Rcpp::List getChildXICpp(Rcpp::List, Rcpp::List, int, int, std::string, double, std::string, std::string, const std::vector<double>&, double, double, double, bool, double, double, int, bool, double, double, std::string, std::string, bool)':
Rmain.cpp:771:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
771 | for(int i = 0; i<intensity1.size(); i++){
| ~^~~~~~~~~~~~~~~~~~
Rmain.cpp:818:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
818 | for(int i = 0; i < keep.size(); i++){
| ~~^~~~~~~~~~~~~
Rmain.cpp:824:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
824 | for(int j = 0; j <intensity1NN.size(); j++){
| ~~^~~~~~~~~~~~~~~~~~~~
Rmain.cpp:827:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
827 | for(int i = 0; i < keep.size(); i++){
| ~~^~~~~~~~~~~~~
Rmain.cpp:837:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
837 | for(int i = 0; i < keep.size(); i++) alignedChildTime[keep[i]] = t1NN[i];
| ~~^~~~~~~~~~~~~
Rmain.cpp:862:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
862 | for (int i = 0; i < intensity1NN.size(); i++){
| ~~^~~~~~~~~~~~~~~~~~~~~
Rmain.cpp:873:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
873 | for(int i =0, j = 0; i < alignedChildTime.size(); i++){
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
Rmain.cpp: In function 'Rcpp::List otherChildXICpp(Rcpp::List, Rcpp::List, int, int, Rcpp::NumericMatrix, std::vector<double>, double, std::string)':
Rmain.cpp:944:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
944 | for(int i = 0; i<intensity1.size(); i++){
| ~^~~~~~~~~~~~~~~~~~
Rmain.cpp:972:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
972 | for(int j = 0; j <intensity1NN.size(); j++){
| ~~^~~~~~~~~~~~~~~~~~~~
Rmain.cpp:975:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
975 | for(int i = 0; i < keep.size(); i++){
| ~~^~~~~~~~~~~~~
Rmain.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
1008 | for (int i = 0; i < intensity1NN.size(); i++){
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from Rmain.cpp:19:
miscell.h: At global scope:
miscell.h:14:19: warning: 'const bool DIAlign::detect_end_na(double, double)' declared 'static' but never defined [-Wunused-function]
14 | static bool const detect_end_na(double a, double b);
| ^~~~~~~~~~~~~
miscell.h:16:19: warning: 'const bool DIAlign::detect_start_na(double, double)' declared 'static' but never defined [-Wunused-function]
16 | static bool const detect_start_na(double a, double b);
| ^~~~~~~~~~~~~~~
miscell.h:18:19: warning: 'const bool DIAlign::lessZero(double)' declared 'static' but never defined [-Wunused-function]
18 | static bool const lessZero(double a);
| ^~~~~~~~
In file included from miscell.h:9:
spline.h:390:10: warning: 'double DIAlign::{anonymous}::tk::spline::deriv(int, double) const' defined but not used [-Wunused-function]
390 | double spline::deriv(int order, double x) const
| ^~~~~~
spline.h:364:10: warning: 'double DIAlign::{anonymous}::tk::spline::operator()(double) const' defined but not used [-Wunused-function]
364 | double spline::operator() (double x) const
| ^~~~~~
spline.h:273:8: warning: 'void DIAlign::{anonymous}::tk::spline::set_points(const std::vector<double>&, const std::vector<double>&, bool)' defined but not used [-Wunused-function]
273 | void spline::set_points(const std::vector<double>& x,
| ^~~~~~
spline.h:261:8: warning: 'void DIAlign::{anonymous}::tk::spline::set_boundary(bd_type, double, bd_type, double, bool)' defined but not used [-Wunused-function]
261 | void spline::set_boundary(spline::bd_type left, double left_value,
| ^~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SavitzkyGolayFilter.cpp -o SavitzkyGolayFilter.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
from SavitzkyGolayFilter.cpp:1:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>'
96 | class SparseMatrix
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1>'
178 | class Matrix
| ^~~~~~
SavitzkyGolayFilter.cpp:14:24: required from here
14 | Eigen::MatrixXd A (frame_size_, order_ + 1);
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1>'
178 | class Matrix
| ^~~~~~
SavitzkyGolayFilter.cpp:14:24: required from here
14 | Eigen::MatrixXd A (frame_size_, order_ + 1);
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/SVDBase.h:274:22: required from 'class Eigen::SVDBase<Eigen::JacobiSVD<Eigen::Matrix<double, -1, -1>, 2> >'
274 | SingularValuesType m_singularValues;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:488:60: required from 'class Eigen::JacobiSVD<Eigen::Matrix<double, -1, -1>, 2>'
488 | template<typename _MatrixType, int QRPreconditioner> class JacobiSVD
| ^~~~~~~~~
SavitzkyGolayFilter.cpp:24:44: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 1, -1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:440:19: required from 'class Eigen::ColPivHouseholderQR<Eigen::Matrix<double, -1, -1> >'
440 | RowVectorType m_temp;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:246:10: required from 'struct Eigen::internal::qr_preconditioner_impl<Eigen::Matrix<double, -1, -1>, 2, 0, true>'
246 | QRType m_qr;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:609:110: required from 'class Eigen::JacobiSVD<Eigen::Matrix<double, -1, -1>, 2>'
609 | internal::qr_preconditioner_impl<MatrixType, QRPreconditioner, internal::PreconditionIfMoreColsThanRows> m_qr_precond_morecols;
| ^~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:44: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:679:37: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
679 | RealScalar scale = matrix.cwiseAbs().template maxCoeff<PropagateNaN>();
| ~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:691:29: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
691 | m_scaledMatrix = matrix / scale;
| ~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:691:29: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
691 | m_scaledMatrix = matrix / scale;
| ~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, -1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::Matrix<double, -1, -1>, -1, -1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:697:32: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
697 | m_workMatrix = matrix.block(0,0,m_diagSize,m_diagSize) / scale;
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:697:60: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
697 | m_workMatrix = matrix.block(0,0,m_diagSize,m_diagSize) / scale;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Diagonal<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Diagonal<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >, 0>'
63 | template<typename MatrixType, int _DiagIndex> class Diagonal
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:705:61: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
705 | RealScalar maxDiagEntry = m_workMatrix.cwiseAbs().diagonal().maxCoeff();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, 1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:758:35: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
758 | if(computeU()) m_matrixU.col(i) *= m_workMatrix.coeff(i,i)/a;
| ~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:765:62: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
765 | if(computeU() && (a<RealScalar(0))) m_matrixU.col(i) = -m_matrixU.col(i);
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, 1>, -1, 1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Matrix<double, -1, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:777:65: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
777 | RealScalar maxRemainingSingularValue = m_singularValues.tail(m_diagSize-i).maxCoeff(&pos);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, -1>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Matrix<double, -1, -1> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:228:33: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
228 | m_adjoint = matrix.adjoint();
| ~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:175:44: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:345:58: required from 'class Eigen::TriangularViewImpl<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 1, Eigen::Dense>'
345 | template<typename _MatrixType, unsigned int _Mode> class TriangularViewImpl<_MatrixType,_Mode,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:187:58: required from 'class Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 1>'
187 | template<typename _MatrixType, unsigned int _Mode> class TriangularView
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:231:121: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
231 | svd.m_workMatrix = m_qr.matrixQR().block(0,0,matrix.rows(),matrix.rows()).template triangularView<Upper>().adjoint();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 2, 2>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 2, 2>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 2, 2>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 2, 2> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 2, 2> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 2, 2> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 2, 2>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/misc/RealSvd2x2.h:25:26: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation<RealScalar>*, Eigen::JacobiRotation<RealScalar>*) [with MatrixType = Eigen::Matrix<double, -1, -1>; RealScalar = double; Index = long long int]'
25 | Matrix<RealScalar,2,2> m;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:730:42: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
730 | internal::real_2x2_jacobi_svd(m_workMatrix, p, q, &j_left, &j_right);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, 1, -1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:297:10: required from 'void Eigen::MatrixBase<Derived>::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation<OtherScalar>&) [with OtherScalar = double; Derived = Eigen::Matrix<double, -1, -1>; Eigen::Index = long long int]'
297 | RowXpr x(this->row(p));
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:733:40: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
733 | m_workMatrix.applyOnTheLeft(p,q,j_left);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/SelfCwiseBinaryOp.h:20:67: required from 'Derived& Eigen::DenseBase<Derived>::operator*=(const Scalar&) [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Scalar = double]'
20 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::mul_assign_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:758:39: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
758 | if(computeU()) m_matrixU.col(i) *= m_workMatrix.coeff(i,i)/a;
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal<Eigen::Matrix<double, -1, -1>, 0>'
63 | template<typename MatrixType, int _DiagIndex> class Diagonal
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:297:21: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
297 | dst.diagonal().setOnes();
| ~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:303:34: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:59: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:310:26: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
310 | dst.col(k).tail(rows()-k-1).setZero();
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, 1>, -1, 1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>'
56 | template<typename VectorType, int Size> class VectorBlock
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:82: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:297:10: required from 'void Eigen::MatrixBase<Derived>::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation<OtherScalar>&) [with OtherScalar = double; Derived = Eigen::Matrix<double, 2, 2>; Eigen::Index = long long int]'
297 | RowXpr x(this->row(p));
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/misc/RealSvd2x2.h:46:19: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation<RealScalar>*, Eigen::JacobiRotation<RealScalar>*) [with MatrixType = Eigen::Matrix<double, -1, -1>; RealScalar = double; Index = long long int]'
46 | m.applyOnTheLeft(0,1,rot1);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:730:42: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
730 | internal::real_2x2_jacobi_svd(m_workMatrix, p, q, &j_left, &j_right);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 2>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false> >'
179 | typedef typename internal::find_best_packet<Scalar,SizeAtCompileTime>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:297:10: required from 'void Eigen::MatrixBase<Derived>::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation<OtherScalar>&) [with OtherScalar = double; Derived = Eigen::Matrix<double, 2, 2>; Eigen::Index = long long int]'
297 | RowXpr x(this->row(p));
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/misc/RealSvd2x2.h:46:19: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation<RealScalar>*, Eigen::JacobiRotation<RealScalar>*) [with MatrixType = Eigen::Matrix<double, -1, -1>; RealScalar = double; Index = long long int]'
46 | m.applyOnTheLeft(0,1,rot1);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:730:42: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
730 | internal::real_2x2_jacobi_svd(m_workMatrix, p, q, &j_left, &j_right);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:277:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:475:5: required from 'void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase<Derived>&, Eigen::DenseBase<Derived>&, const Eigen::JacobiRotation<OtherScalar>&) [with VectorX = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; VectorY = Eigen::Block<Eigen::Matrix<double, -1, -1>, 1, -1, false>; OtherScalar = double]'
475 | EIGEN_PLAIN_ENUM_MIN(evaluator<VectorX>::Alignment, evaluator<VectorY>::Alignment),
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:299:40: required from 'void Eigen::MatrixBase<Derived>::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation<OtherScalar>&) [with OtherScalar = double; Derived = Eigen::Matrix<double, -1, -1>; Eigen::Index = long long int]'
299 | internal::apply_rotation_in_the_plane(x, y, j);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:733:40: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
733 | m_workMatrix.applyOnTheLeft(p,q,j_left);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:475:5: required from 'void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase<Derived>&, Eigen::DenseBase<Derived>&, const Eigen::JacobiRotation<OtherScalar>&) [with VectorX = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; VectorY = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; OtherScalar = double]'
475 | EIGEN_PLAIN_ENUM_MIN(evaluator<VectorX>::Alignment, evaluator<VectorY>::Alignment),
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:315:40: required from 'void Eigen::MatrixBase<Derived>::applyOnTheRight(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation<OtherScalar>&) [with OtherScalar = double; Derived = Eigen::Matrix<double, -1, -1>; Eigen::Index = long long int]'
315 | internal::apply_rotation_in_the_plane(x, y, j.transpose());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:734:53: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
734 | if(computeU()) m_matrixU.applyOnTheRight(p,q,j_left.transpose());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:521:73: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
521 | RealScalar biggest_col_sq_norm = numext::abs2(m_colNormsUpdated.tail(cols-k).maxCoeff(&biggest_col_index));
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:165:63: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
165 | Map<typename internal::plain_col_type<PlainObject>::type> tmp(workspace,rows());
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:166:82: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
166 | Block<Derived, Derived::RowsAtCompileTime, EssentialPart::SizeAtCompileTime> right(derived(), 0, 1, rows(), cols()-1);
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:27: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:168:21: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
168 | tmp += this->col(0);
| ~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:169:25: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
169 | this->col(0) -= tau * tmp;
| ~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:169:25: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
169 | this->col(0) -= tau * tmp;
| ~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:53: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
170 | right.noalias() -= tau * tmp * essential.adjoint();
| ~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0, 5>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:34: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
170 | right.noalias() -= tau * tmp * essential.adjoint();
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:127:63: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
127 | Map<typename internal::plain_row_type<PlainObject>::type> tmp(workspace,cols());
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:41: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:130:21: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
130 | tmp += this->row(0);
| ~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:131:25: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
131 | this->row(0) -= tau * tmp;
| ~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:131:25: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
131 | this->row(0) -= tau * tmp;
| ~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:29: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
132 | bottom.noalias() -= tau * essential * tmp;
| ~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0, 5>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:41: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
132 | bottom.noalias() -= tau * essential * tmp;
| ~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:90:75: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
90 | Matrix<typename MatrixType::Scalar, TFactorSize, TFactorSize, RowMajor> T(nbVecs,nbVecs);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:175:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:93: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0, 8>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:96: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0, 8>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::TriangularView<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 2>, Eigen::Matrix<double, -1, -1>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:101:66: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
101 | if(forward) tmp = T.template triangularView<Upper>() * tmp;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:175:44: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:63: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
102 | else tmp = T.template triangularView<Upper>().adjoint() * tmp;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0, 8>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 1>, Eigen::Matrix<double, -1, -1>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:66: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
102 | else tmp = T.template triangularView<Upper>().adjoint() * tmp;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0, 8>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, 0>'
71 | class Product : public ProductImpl<_Lhs,_Rhs,Option,
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:22: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_identity_op<double>, Eigen::Matrix<double, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:846:33: required from 'static Derived& Eigen::internal::setIdentity_impl<Derived, Big>::run(Derived&) [with Derived = Eigen::Matrix<double, -1, -1>; bool Big = false]'
846 | return m = Derived::Identity(m.rows(), m.cols());
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:875:50: required from 'Derived& Eigen::MatrixBase<Derived>::setIdentity() [with Derived = Eigen::Matrix<double, -1, -1>]'
875 | return internal::setIdentity_impl<Derived>::run(derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:892:21: required from 'Derived& Eigen::MatrixBase<Derived>::setIdentity(Eigen::Index, Eigen::Index) [with Derived = Eigen::Matrix<double, -1, -1>; Eigen::Index = long long int]'
892 | return setIdentity();
| ~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:698:45: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
698 | if(m_computeFullU) m_matrixU.setIdentity(m_rows,m_rows);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:475:5: required from 'void Eigen::internal::apply_rotation_in_the_plane(Eigen::DenseBase<Derived>&, Eigen::DenseBase<Derived>&, const Eigen::JacobiRotation<OtherScalar>&) [with VectorX = Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>; VectorY = Eigen::Block<Eigen::Matrix<double, 2, 2>, 1, 2, false>; OtherScalar = double]'
475 | EIGEN_PLAIN_ENUM_MIN(evaluator<VectorX>::Alignment, evaluator<VectorY>::Alignment),
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Jacobi/Jacobi.h:299:40: required from 'void Eigen::MatrixBase<Derived>::applyOnTheLeft(Eigen::Index, Eigen::Index, const Eigen::JacobiRotation<OtherScalar>&) [with OtherScalar = double; Derived = Eigen::Matrix<double, 2, 2>; Eigen::Index = long long int]'
299 | internal::apply_rotation_in_the_plane(x, y, j);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/misc/RealSvd2x2.h:46:19: required from 'void Eigen::internal::real_2x2_jacobi_svd(const MatrixType&, Index, Index, Eigen::JacobiRotation<RealScalar>*, Eigen::JacobiRotation<RealScalar>*) [with MatrixType = Eigen::Matrix<double, -1, -1>; RealScalar = double; Index = long long int]'
46 | m.applyOnTheLeft(0,1,rot1);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:730:42: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
730 | internal::real_2x2_jacobi_svd(m_workMatrix, p, q, &j_left, &j_right);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from 'class Eigen::internal::visitor_evaluator<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false> >'
79 | CoeffReadCost = internal::evaluator<XprType>::CoeffReadCost
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from 'void Eigen::DenseBase<Derived>::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor<Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>, 0>; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>]'
123 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:374:14: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff(IndexType*) const [with int NaNPropagation = 0; IndexType = long long int; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; typename Eigen::internal::traits<T>::Scalar = double]'
374 | this->visit(maxVisitor);
| ~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:501:37: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff(IndexType*) const [with IndexType = long long int; Derived = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; typename Eigen::internal::traits<T>::Scalar = double]'
501 | return maxCoeff<PropagateFast>(index);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:777:88: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
777 | RealScalar maxRemainingSingularValue = m_singularValues.tail(m_diagSize-i).maxCoeff(&pos);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; Func = Eigen::internal::scalar_max_op<double, double, 1>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 1>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 1; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<double>, const Eigen::Matrix<double, -1, -1> >; typename Eigen::internal::traits<T>::Scalar = double]'
448 | return derived().redux(Eigen::internal::scalar_max_op<Scalar,Scalar, NaNPropagation>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:679:71: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
679 | RealScalar scale = matrix.cwiseAbs().template maxCoeff<PropagateNaN>();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:132:29: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
132 | bottom.noalias() -= tau * essential * tmp;
| ~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0, 5>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:406:42: required from 'Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::TriangularViewType& Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::setConstant(const Scalar&) [with _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int _Mode = 10; TriangularViewType = Eigen::TriangularView<Eigen::Matrix<double, -1, -1>, 10>; Scalar = double]'
406 | { return *this = MatrixType::Constant(derived().rows(), derived().cols(), value); }
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:409:44: required from 'Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::TriangularViewType& Eigen::TriangularViewImpl<_MatrixType, _Mode, Eigen::Dense>::setZero() [with _MatrixType = Eigen::Matrix<double, -1, -1>; unsigned int _Mode = 10; TriangularViewType = Eigen::TriangularView<Eigen::Matrix<double, -1, -1>, 10>]'
409 | TriangularViewType& setZero() { return setConstant(Scalar(0)); }
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:298:61: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
298 | dst.template triangularView<StrictlyUpper>().setZero();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:57: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
63 | triFactor.row(i).tail(rt).noalias() = -hCoeffs(i) * vectors.col(i).tail(rs).adjoint()
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Product<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from 'class Eigen::internal::dense_product_base<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0, 7>'
120 | class dense_product_base
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from 'class Eigen::ProductImpl<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::TriangularView<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 5>, 0, Eigen::Dense>'
152 | class ProductImpl<Lhs,Rhs,Option,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:73:50: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
73 | triFactor.row(i).tail(nbVecs-j-1) += z * triFactor.row(j).tail(nbVecs-j-1);
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:507:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
507 | m_colNormsDirect.coeffRef(k) = m_qr.col(k).norm();
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:93:22: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:567:77: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
567 | m_colNormsDirect.coeffRef(j) = m_qr.col(j).tail(rows - k - 1).norm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from 'class Eigen::internal::visitor_evaluator<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false> >'
79 | CoeffReadCost = internal::evaluator<XprType>::CoeffReadCost
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from 'void Eigen::DenseBase<Derived>::visit(Visitor&) const [with Visitor = Eigen::internal::max_coeff_visitor<Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>, 0>; Derived = Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>]'
123 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:374:14: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff(IndexType*) const [with int NaNPropagation = 0; IndexType = long long int; Derived = Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>; typename Eigen::internal::traits<T>::Scalar = double]'
374 | this->visit(maxVisitor);
| ~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:501:37: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff(IndexType*) const [with IndexType = long long int; Derived = Eigen::Block<Eigen::Matrix<double, 1, -1>, 1, -1, false>; typename Eigen::internal::traits<T>::Scalar = double]'
501 | return maxCoeff<PropagateFast>(index);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:521:90: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
521 | RealScalar biggest_col_sq_norm = numext::abs2(m_colNormsUpdated.tail(cols-k).maxCoeff(&biggest_col_index));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:142:7: required from 'Eigen::DenseCoeffsBase<Derived, 0>::CoeffReturnType Eigen::DenseCoeffsBase<Derived, 0>::coeff(Eigen::Index) const [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; CoeffReturnType = const double&; Eigen::Index = long long int]'
142 | EIGEN_STATIC_ASSERT(internal::evaluator<Derived>::Flags & LinearAccessBit,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:79:20: required from 'void Eigen::MatrixBase<Derived>::makeHouseholder(EssentialPart&, Scalar&, RealScalar&) const [with EssentialPart = Eigen::VectorBlock<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; Scalar = double; RealScalar = double]'
79 | Scalar c0 = coeff(0);
| ~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:46:18: required from 'void Eigen::MatrixBase<Derived>::makeHouseholderInPlace(Scalar&, RealScalar&) [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; Scalar = double; RealScalar = double]'
46 | makeHouseholder(essentialPart, tau, beta);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >'
1043 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from 'struct Eigen::internal::plain_object_eval<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Dense>'
372 | typedef typename plain_matrix_type_dense<T,typename traits<T>::XprKind, evaluator<T>::Flags>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from 'struct Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>'
369 | typedef typename nested_eval<Lhs,1>::type LhsNested;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from 'struct Eigen::internal::plain_object_eval<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Dense>'
372 | typedef typename plain_matrix_type_dense<T,typename traits<T>::XprKind, evaluator<T>::Flags>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:369:45: required from 'struct Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>'
369 | typedef typename nested_eval<Lhs,1>::type LhsNested;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>; ExpressionType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from 'struct Eigen::internal::plain_object_eval<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::Dense>'
372 | typedef typename plain_matrix_type_dense<T,typename traits<T>::XprKind, evaluator<T>::Flags>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:370:45: required from 'struct Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>'
370 | typedef typename nested_eval<Rhs,1>::type RhsNested;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: required from 'static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; int Options = 0; Scalar = double; SrcXprType = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>]'
148 | generic_product_impl<Lhs, Rhs>::evalTo(dst, src.lhs(), src.rhs());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/NoAlias.h:43:31: required from 'ExpressionType& Eigen::NoAlias<ExpressionType, StorageBase>::operator=(const StorageBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, 0>; ExpressionType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; StorageBase = Eigen::MatrixBase]'
43 | call_assignment_no_alias(m_expression, other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:142:7: required from 'Eigen::DenseCoeffsBase<Derived, 0>::CoeffReturnType Eigen::DenseCoeffsBase<Derived, 0>::coeff(Eigen::Index) const [with Derived = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long long int]'
142 | EIGEN_STATIC_ASSERT(internal::evaluator<Derived>::Flags & LinearAccessBit,
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:182:19: required from 'Eigen::DenseCoeffsBase<Derived, 0>::CoeffReturnType Eigen::DenseCoeffsBase<Derived, 0>::operator()(Eigen::Index) const [with Derived = Eigen::Block<const Eigen::Matrix<double, -1, 1>, -1, 1, false>; CoeffReturnType = double; Eigen::Index = long long int]'
182 | return coeff(index);
| ~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:63:53: required from 'void Eigen::internal::make_block_householder_triangular_factor(TriangularFactorType&, const VectorsType&, const CoeffsType&) [with TriangularFactorType = Eigen::Matrix<double, -1, -1, 1, -1, -1>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
63 | triFactor.row(i).tail(rt).noalias() = -hCoeffs(i) * vectors.col(i).tail(rs).adjoint()
| ~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; Derived = Eigen::Matrix<double, -1, -1>]'
779 | internal::call_assignment(this->derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]'
225 | return Base::_set(other);
| ~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:697:18: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
697 | m_workMatrix = matrix.block(0,0,m_diagSize,m_diagSize) / scale;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Matrix<double, 1, -1>; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::Matrix<double, 1, -1>; Func = Eigen::internal::scalar_max_op<double, double, 0>; Evaluator = Eigen::internal::redux_evaluator<Eigen::Matrix<double, 1, -1> >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_max_op<double, double, 0>; Derived = Eigen::Matrix<double, 1, -1>; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:448:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with int NaNPropagation = 0; Derived = Eigen::Matrix<double, 1, -1>; typename Eigen::internal::traits<T>::Scalar = double]'
448 | return derived().redux(Eigen::internal::scalar_max_op<Scalar,Scalar, NaNPropagation>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:466:37: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::maxCoeff() const [with Derived = Eigen::Matrix<double, 1, -1>; typename Eigen::internal::traits<T>::Scalar = double]'
466 | return maxCoeff<PropagateFast>();
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:511:85: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
511 | RealScalar threshold_helper = numext::abs2<RealScalar>(m_colNormsUpdated.maxCoeff() * NumTraits<RealScalar>::epsilon()) / RealScalar(rows);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:564:45: required from 'struct Eigen::internal::unary_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >, Eigen::internal::IndexBased, double>'
564 | CoeffReadCost = int(evaluator<ArgType>::CoeffReadCost) + int(functor_traits<UnaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Functor = add_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Functor = Eigen::internal::add_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Func = add_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator+=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>; Derived = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]'
177 | call_assignment(derived(), other.derived(), internal::add_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:168:9: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
168 | tmp += this->col(0);
| ~~~~^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:21: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
170 | right.noalias() -= tau * tmp * essential.adjoint();
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:21: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
170 | right.noalias() -= tau * tmp * essential.adjoint();
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:280:48: required from 'void Eigen::internal::outer_product_selector_run(Dst&, const Lhs&, const Rhs&, const Func&, const false_type&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >; Rhs = Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >; Func = generic_product_impl<Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >, Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::DenseShape, Eigen::DenseShape, 5>::sub]'
280 | func(dst.col(j), rhsEval.coeff(Index(0),j) * actual_lhs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:329:41: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:21: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
170 | right.noalias() -= tau * tmp * essential.adjoint();
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Functor = add_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::add_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Func = add_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Func = add_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator+=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Derived = Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >]'
177 | call_assignment(derived(), other.derived(), internal::add_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:130:9: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
130 | tmp += this->row(0);
| ~~~~^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::norm() const [with Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
110 | return numext::sqrt(squaredNorm());
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:507:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
507 | m_colNormsDirect.coeffRef(k) = m_qr.col(k).norm();
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::norm() const [with Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
110 | return numext::sqrt(squaredNorm());
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:567:77: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
567 | m_colNormsDirect.coeffRef(j) = m_qr.col(j).tail(rows - k - 1).norm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >; Scalar = double]'
347 | return derived() = Constant(rows(), cols(), val);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >]'
548 | return setConstant(Scalar(0));
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:16: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >'
1043 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; Functor = add_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; Functor = Eigen::internal::add_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:78:71: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:333:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:87:38: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
87 | typedef typename Traits::LhsPacket LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:91:42: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
91 | typedef typename HalfTraits::LhsPacket LhsPacketHalf;
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'class Eigen::internal::gemv_traits<double, double, 2>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:95:45: required from 'struct Eigen::internal::general_matrix_vector_product<long long int, double, Eigen::internal::const_blas_data_mapper<double, long long int, 0>, 0, false, double, Eigen::internal::const_blas_data_mapper<double, long long int, 1>, false, 0>'
95 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]'
252 | general_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
253 | <Index,LhsScalar,LhsMapper,ColMajor,LhsBlasTraits::NeedToConjugate,RhsScalar,RhsMapper,RhsBlasTraits::NeedToConjugate>::run(
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
254 | actualLhs.rows(), actualLhs.cols(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
257 | dest.data(), 1,
| ~~~~~~~~~~~~~~~
258 | compatibleAlpha);
| ~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::DenseShape, Eigen::DenseShape, 7>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Scalar = double]'
385 | internal::gemv_dense_selector<Side,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
386 | (int(MatrixType::Flags)&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
387 | bool(internal::blas_traits<MatrixType>::HasUsableDirectAccess)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
388 | >::run(actual_lhs, actual_rhs, dst, alpha);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, Eigen::DenseShape, Eigen::DenseShape, 7>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
42 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
52 | unpacket_traits<_RhsPacket>::vectorizable &&
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size),
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
59 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
60 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
61 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 2, Eigen::Stride<0, 0> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40: required from 'static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Rhs = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Dest::Scalar = double]'
296 | dest.matrix() += actualAlpha * MappedDest(actualDestPtr, dest.size());
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> > >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:330:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'class Eigen::internal::gebp_traits<double, double, false, false, 1, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:92:29: required from 'struct Eigen::internal::product_triangular_matrix_matrix<double, long long int, 5, true, 0, false, 0, false, 0, 1, 0>'
92 | SmallPanelWidth = 2 * EIGEN_PLAIN_ENUM_MAX(Traits::mr,Traits::nr),
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::TriangularShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; int ProductTag = 8; Scalar = double]'
769 | triangular_product_impl<Lhs::Mode,true,typename Lhs::MatrixType,false,Rhs, Rhs::ColsAtCompileTime==1>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
770 | ::run(dst, lhs.nestedExpression(), rhs, alpha);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>]'
357 | { scaleAndAddTo(dst, lhs, rhs, Scalar(-1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
460 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
461 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
462 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
465 | typedef QuadPacket<RhsPacket> RhsPacketx4;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
457 | dst.topRows(diagSize) -= ((lhs_alpha-LhsScalar(1))*a_rhs).topRows(diagSize);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false, false>'
172 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
462 | dst.leftCols(diagSize) -= (rhs_alpha-RhsScalar(1))*a_lhs.leftCols(diagSize);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Functor = assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false>, -1, 1, false>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> > >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:540:52: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
540 | m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> > >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:207:43: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false>; U = Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Transpose<Eigen::Map<Eigen::Matrix<double, 1, -1>, 0, Eigen::Stride<0, 0> > >, -1, 1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:32: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:48: required from 'static void Eigen::internal::triangular_product_impl<Mode, false, Lhs, true, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false>; int Mode = 5; Lhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >; Rhs = const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; typename Dest::Scalar = double]'
194 | ::run(rhs.transpose(),lhs.transpose(), dstT, alpha);
| ~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:783:113: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 64>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 8, 8, 0, 8, 8> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 8, 8, 0, 8, 8>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:150:68: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
150 | Matrix<Scalar,SmallPanelWidth,SmallPanelWidth,LhsStorageOrder> triangularBuffer(a);
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 8, 0, 8, 8> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>'
63 | template<typename MatrixType, int _DiagIndex> class Diagonal
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 8>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:179:81: required from 'class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >'
179 | typedef typename internal::find_best_packet<Scalar,SizeAtCompileTime>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>'
63 | template<typename MatrixType, int _DiagIndex> class Diagonal
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
153 | triangularBuffer.diagonal().setZero();
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'class Eigen::internal::gebp_traits<double, double, false, false, 1, 1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1080:42: required from 'struct Eigen::internal::gebp_kernel<double, double, long long int, Eigen::internal::blas_data_mapper<double, long long int, 0, 0, 1>, 4, 4, false, false>'
1080 | typedef typename HalfTraits::LhsPacket LhsPacketHalf;
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:157:103: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
157 | gebp_kernel<Scalar, Scalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp_kernel;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::TriangularShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; int ProductTag = 8; Scalar = double]'
769 | triangular_product_impl<Lhs::Mode,true,typename Lhs::MatrixType,false,Rhs, Rhs::ColsAtCompileTime==1>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
770 | ::run(dst, lhs.nestedExpression(), rhs, alpha);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
460 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
461 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
462 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
465 | typedef QuadPacket<RhsPacket> RhsPacketx4;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'class Eigen::internal::gebp_traits<double, double, false, false, 1, 2>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1085:45: required from 'struct Eigen::internal::gebp_kernel<double, double, long long int, Eigen::internal::blas_data_mapper<double, long long int, 0, 0, 1>, 4, 4, false, false>'
1085 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:157:103: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
157 | gebp_kernel<Scalar, Scalar, Index, ResMapper, Traits::mr, Traits::nr, ConjugateLhs, ConjugateRhs> gebp_kernel;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::TriangularShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; int ProductTag = 8; Scalar = double]'
769 | triangular_product_impl<Lhs::Mode,true,typename Lhs::MatrixType,false,Rhs, Rhs::ColsAtCompileTime==1>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
770 | ::run(dst, lhs.nestedExpression(), rhs, alpha);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:425:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
425 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:426:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
426 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:427:27: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
427 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:384:3: note: in definition of macro 'PACKET_DECL_COND_PREFIX'
384 | prefix ## name ## Packet
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:49: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
432 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && unpacket_traits<_RhsPacket>::vectorizable,
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:432:94: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
433 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:433:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
434 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:434:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
435 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:435:65: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
460 | typedef typename conditional<Vectorizable,_LhsPacket,LhsScalar>::type LhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:460:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
461 | typedef typename conditional<Vectorizable,_RhsPacket,RhsScalar>::type RhsPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:461:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
462 | typedef typename conditional<Vectorizable,_ResPacket,ResScalar>::type ResPacket;
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:462:73: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
465 | typedef QuadPacket<RhsPacket> RhsPacketx4;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:465:33: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:506:13: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, false>'
172 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:54: required from 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]'
341 | dest.head(diagSize) -= (lhs_alpha-LhsScalar(1))*rhs.head(diagSize);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:59: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; typename Dest::Scalar = double]'
457 | dst.topRows(diagSize) -= ((lhs_alpha-LhsScalar(1))*a_rhs).topRows(diagSize);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false, false>'
172 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:74: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; typename Dest::Scalar = double]'
462 | dst.leftCols(diagSize) -= (rhs_alpha-RhsScalar(1))*a_lhs.leftCols(diagSize);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gemm_pack_rhs<Scalar, Index, DataMapper, nr, 0, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long long int, 0>; int nr = 4; bool Conjugate = false; bool PanelMode = false]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:175:15: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
175 | pack_rhs(blockB, rhs.getSubMapper(actual_k2,0), actual_kc, cols);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::TriangularShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; int ProductTag = 8; Scalar = double]'
769 | triangular_product_impl<Lhs::Mode,true,typename Lhs::MatrixType,false,Rhs, Rhs::ColsAtCompileTime==1>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
770 | ::run(dst, lhs.nestedExpression(), rhs, alpha);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>]'
357 | { scaleAndAddTo(dst, lhs, rhs, Scalar(-1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2459:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
2459 | PacketBlock<Packet,(PacketSize%4)==0?4:PacketSize> kernel;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gemm_pack_lhs<Scalar, Index, DataMapper, Pack1, Pack2, Packet, 0, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long long int, 0>; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:203:19: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
203 | pack_lhs(blockA, LhsMapper(triangularBuffer.data(), triangularBuffer.outerStride()), actualPanelWidth, actualPanelWidth);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::TriangularShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; int ProductTag = 8; Scalar = double]'
769 | triangular_product_impl<Lhs::Mode,true,typename Lhs::MatrixType,false,Rhs, Rhs::ColsAtCompileTime==1>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
770 | ::run(dst, lhs.nestedExpression(), rhs, alpha);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>]'
357 | { scaleAndAddTo(dst, lhs, rhs, Scalar(-1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2100:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2100 | typedef typename unpacket_traits<typename unpacket_traits<Packet>::half>::half QuarterPacket;
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2102:56: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2102 | HalfPacketSize = unpacket_traits<HalfPacket>::size,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2103 | QuarterPacketSize = unpacket_traits<QuarterPacket>::size,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2103:62: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, DataMapper, mr, nr, ConjugateLhs, ConjugateRhs>::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long long int; DataMapper = Eigen::internal::blas_data_mapper<double, long long int, 0, 0, 1>; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:205:22: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 5; int LhsStorageOrder = 0; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
205 | gebp_kernel(res.getSubMapper(startBlock, 0), blockA, blockB,
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
206 | actualPanelWidth, actualPanelWidth, cols, alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
207 | actualPanelWidth, actual_kc, 0, blockBOffset);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int Mode = 5; bool LhsIsTriangular = true; Lhs = const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::TriangularShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; int ProductTag = 8; Scalar = double]'
769 | triangular_product_impl<Lhs::Mode,true,typename Lhs::MatrixType,false,Rhs, Rhs::ColsAtCompileTime==1>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
770 | ::run(dst, lhs.nestedExpression(), rhs, alpha);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:357:18: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>; Rhs = Eigen::Matrix<double, -1, -1>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 5>, Eigen::Matrix<double, -1, -1>, Eigen::TriangularShape, Eigen::DenseShape, 8>]'
357 | { scaleAndAddTo(dst, lhs, rhs, Scalar(-1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:178:42: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1920:103: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
1920 | const int SResPacketHalfSize = unpacket_traits<typename unpacket_traits<SResPacket>::half>::size;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
1921 | const int SResPacketQuarterSize = unpacket_traits<typename unpacket_traits<typename unpacket_traits<SResPacket>::half>::half>::size;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1921:138: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1977:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
1977 | typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SResPacket>::half,SResPacket>::type SResPacketHalf;
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1978:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
1978 | typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SLhsPacket>::half,SLhsPacket>::type SLhsPacketHalf;
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1979:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
1979 | typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SRhsPacket>::half,SRhsPacket>::type SRhsPacketHalf;
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1980:135: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
1980 | typedef typename conditional<SwappedTraits::LhsProgress>=8,typename unpacket_traits<SAccPacket>::half,SAccPacket>::type SAccPacketHalf;
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, 1, -1, false> >, const Eigen::Block<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:167:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
167 | tmp.noalias() = right * essential;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:115:18: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >'
94 | template<typename PlainObjectType, int MapOptions, typename StrideType> class Map
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:119:18: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::InnerStride<> >, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from 'class Eigen::TransposeImpl<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false>, Eigen::Dense>'
118 | template<typename MatrixType> class TransposeImpl<MatrixType,Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
52 | template<typename MatrixType> class Transpose
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:106: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:77: required from 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]'
137 | res.coeffRef(i) += alpha * (cjLhs.row(i).segment(s,r).cwiseProduct(cjRhs.segment(s,r).transpose())).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 8, 8, 1, 8, 8> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 8, 8, 1, 8, 8> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 8, 1, 8, 8> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Diagonal.h:63:53: required from 'class Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 1, 8, 8>, 0>'
63 | template<typename MatrixType, int _DiagIndex> class Diagonal
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:32: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 0, 8, 8> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Matrix<double, 8, 8, 0, 8, 8>; Scalar = double]'
347 | return derived() = Constant(rows(), cols(), val);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Matrix<double, 8, 8, 0, 8, 8>]'
548 | return setConstant(Scalar(0));
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 1, 0, 8, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>; Scalar = double]'
347 | return derived() = Constant(rows(), cols(), val);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Diagonal<Eigen::Matrix<double, 8, 8, 0, 8, 8>, 0>]'
548 | return setConstant(Scalar(0));
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:153:42: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = sub_assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Map<Eigen::Matrix<double, -1, 1>, 16, Eigen::Stride<0, 0> > >; Derived = Eigen::Block<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>]'
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:305:153: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:170:21: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheRight(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
170 | right.noalias() -= tau * tmp * essential.adjoint();
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:304:43: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
303 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
304 | .applyHouseholderOnTheRight(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'void Eigen::internal::gemm_pack_lhs<Scalar, Index, DataMapper, Pack1, Pack2, Packet, 1, Conjugate, PanelMode>::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long long int; DataMapper = Eigen::internal::const_blas_data_mapper<double, long long int, 1>; int Pack1 = 4; int Pack2 = 2; Packet = __vector(2) double; bool Conjugate = false; bool PanelMode = false]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:203:19: required from 'static void Eigen::internal::product_triangular_matrix_matrix<Scalar, Index, Mode, true, LhsStorageOrder, ConjugateLhs, RhsStorageOrder, ConjugateRhs, 0, ResInnerStride, Version>::run(Index, Index, Index, const Scalar*, Index, const Scalar*, Index, Scalar*, Index, Index, const Scalar&, Eigen::internal::level3_blocking<Scalar, Scalar>&) [with Scalar = double; Index = long long int; int Mode = 6; int LhsStorageOrder = 1; bool ConjugateLhs = false; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; int Version = 0]'
203 | pack_lhs(blockA, LhsMapper(triangularBuffer.data(), triangularBuffer.outerStride()), actualPanelWidth, actualPanelWidth);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:443:12: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 6; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; typename Dest::Scalar = double]'
438 | internal::product_triangular_matrix_matrix<Scalar, Index,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
439 | Mode, LhsIsTriangular,
| ~~~~~~~~~~~~~~~~~~~~~~
440 | (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | (internal::traits<ActualRhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | (internal::traits<Dest >::Flags&RowMajorBit) ? RowMajor : ColMajor, Dest::InnerStrideAtCompileTime>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
443 | ::run(
| ~~~~~^
444 | stripedRows, stripedCols, stripedDepth, // sizes
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &rhs.coeffRef(0,0), rhs.outerStride(), // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
447 | &dst.coeffRef(0,0), dst.innerStride(), dst.outerStride(), // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | actualAlpha, blocking
| ~~~~~~~~~~~~~~~~~~~~~
449 | );
| ~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: required from 'static void Eigen::internal::generic_product_impl<Lhs, Rhs, Eigen::TriangularShape, Eigen::DenseShape, ProductTag>::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int ProductTag = 8; Scalar = double]'
769 | triangular_product_impl<Lhs::Mode,true,typename Lhs::MatrixType,false,Rhs, Rhs::ColsAtCompileTime==1>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
770 | ::run(dst, lhs.nestedExpression(), rhs, alpha);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::TriangularShape, Eigen::DenseShape, 8>; Scalar = double]'
361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); }
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from 'static void Eigen::internal::generic_product_impl_base<Lhs, Rhs, Derived>::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix<double, -1, -1>; Lhs = Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>; Rhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Derived = Eigen::internal::generic_product_impl<Eigen::TriangularView<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, 6>, Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, Eigen::TriangularShape, Eigen::DenseShape, 8>]'
349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); }
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2256:82: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2256 | typedef typename unpacket_traits<typename unpacket_traits<Packet>::half>::half QuarterPacket;
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2258:56: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2258 | HalfPacketSize = unpacket_traits<HalfPacket>::size,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2259 | QuarterPacketSize = unpacket_traits<QuarterPacket>::size,
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2259:62: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2298 | PacketBlock<HalfPacket> kernel_half;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2298:39: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
2304 | PacketBlock<QuarterPacket> kernel_quarter;
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:2304:42: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Derived = Eigen::Block<const Eigen::Transpose<const Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/Householder.h:129:19: required from 'void Eigen::MatrixBase<Derived>::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Scalar = double]'
129 | tmp.noalias() = essential.adjoint() * bottom;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:307:42: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::evalTo(Dest&, Workspace&) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
306 | dst.bottomRightCorner(cornerSize, cornerSize)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
307 | .applyHouseholderOnTheLeft(essentialVector(k), m_coeffs.coeff(k), workspace.data());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:232:56: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
232 | if(svd.m_computeFullV) m_qr.householderQ().evalTo(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >'
1043 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, 8, 8, 1, 8, 8> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from 'Derived& Eigen::DenseBase<Derived>::setConstant(const Scalar&) [with Derived = Eigen::Matrix<double, 8, 8, 1, 8, 8>; Scalar = double]'
347 | return derived() = Constant(rows(), cols(), val);
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from 'Derived& Eigen::DenseBase<Derived>::setZero() [with Derived = Eigen::Matrix<double, 8, 8, 1, 8, 8>]'
548 | return setConstant(Scalar(0));
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:151:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 1, 0, 8, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 1, 0, 8, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 8, 1, 0, 8, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 8, 1, 0, 8, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 8, 1, 0, 8, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 8, 1, 0, 8, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Func = sub_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Matrix<double, -1, -1> >, -1, -1, false>; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>]'
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = sub_assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true> >; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, true>]'
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:103:17: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
103 | mat.noalias() -= V * tmp;
| ~~~~~~~~~~~~~~^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<double, double>, const Eigen::Transpose<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true> >, const Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true> >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:50:63: required from 'static Eigen::internal::dot_nocheck<T, U, true>::ResScalar Eigen::internal::dot_nocheck<T, U, true>::run(const Eigen::MatrixBase<Derived>&, const Eigen::MatrixBase<U>&) [with T = Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true>; U = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; ResScalar = double]'
50 | return a.transpose().template binaryExpr<conj_prod>(b).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType Eigen::MatrixBase<Derived>::dot(const Eigen::MatrixBase<OtherDerived>&) const [with OtherDerived = Eigen::Block<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false>, -1, 1, true>; Derived = Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >, 1, -1, true>; typename Eigen::ScalarBinaryOpTraits<typename Eigen::internal::traits<T>::Scalar, typename Eigen::internal::traits<OtherDerived>::Scalar>::ReturnType = double; typename Eigen::internal::traits<T>::Scalar = double; typename Eigen::internal::traits<OtherDerived>::Scalar = double]'
84 | return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:380:62: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:550:35: required from 'void Eigen::ColPivHouseholderQR<MatrixType>::computeInPlace() [with _MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | m_qr.bottomRightCorner(rows-k, cols-k-1)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
550 | .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/QR/ColPivHouseholderQR.h:477:3: required from 'Eigen::ColPivHouseholderQR<_MatrixType>& Eigen::ColPivHouseholderQR<MatrixType>::compute(const Eigen::EigenBase<OtherDerived>&) [with InputType = Eigen::Matrix<double, -1, -1>; _MatrixType = Eigen::Matrix<double, -1, -1>]'
477 | computeInPlace();
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:229:19: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
229 | m_qr.compute(m_adjoint);
| ~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:101:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
101 | if(forward) tmp = T.template triangularView<Upper>() * tmp;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 2; bool LhsIsTriangular = true; Lhs = Eigen::Matrix<double, -1, -1, 1, -1, -1>; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
462 | dst.leftCols(diagSize) -= (rhs_alpha-RhsScalar(1))*a_lhs.leftCols(diagSize);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:101:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
101 | if(forward) tmp = T.template triangularView<Upper>() * tmp;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
102 | else tmp = T.template triangularView<Upper>().adjoint() * tmp;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:59: required from 'static void Eigen::internal::triangular_product_impl<Mode, LhsIsTriangular, Lhs, false, Rhs, false>::run(Dest&, const Lhs&, const Rhs&, const typename Dest::Scalar&) [with Dest = Eigen::Matrix<double, -1, -1>; int Mode = 1; bool LhsIsTriangular = true; Lhs = const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >; Rhs = Eigen::Matrix<double, -1, -1>; typename Dest::Scalar = double]'
462 | dst.leftCols(diagSize) -= (rhs_alpha-RhsScalar(1))*a_lhs.leftCols(diagSize);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:770:14: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
102 | else tmp = T.template triangularView<Upper>().adjoint() * tmp;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::Block<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, 0, Eigen::OuterStride<> >, 1, -1, true>, 1, -1, false>, const Eigen::Transpose<const Eigen::Block<const Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >, -1, 1, false> > >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:137:114: required from 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0; ResScalar = double]'
137 | res.coeffRef(i) += alpha * (cjLhs.row(i).segment(s,r).cwiseProduct(cjRhs.segment(s,r).transpose())).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: required from 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6; typename Dest::Scalar = double]'
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:194:18: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1043:41: required from 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >'
1043 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: [ skipping 27 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from 'struct Eigen::internal::unary_evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> >, Eigen::internal::IndexBased, double>'
311 | CoeffReadCost = evaluator<ArgType>::CoeffReadCost,
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator<Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >'
90 | struct evaluator : public unary_evaluator<T>
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = sub_assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >, -1, 1, false> >; Derived = Eigen::Block<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >, -1, 1, false>]'
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:341:27: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:92:55: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
92 | if(forward) make_block_householder_triangular_factor(T, vectors, hCoeffs);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]'
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:457:31: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Functor = sub_assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Func = sub_assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; Src = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Func = sub_assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:164:18: required from 'Derived& Eigen::MatrixBase<Derived>::operator-=(const Eigen::MatrixBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, -1, -1, false> >; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>]'
164 | call_assignment(derived(), other.derived(), internal::sub_assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixMatrix.h:462:32: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:99:78: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
99 | VectorsType::MaxColsAtCompileTime,MatrixType::MaxColsAtCompileTime> tmp = V.adjoint() * mat;
| ^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1, -1, -1>, -1, -1, false> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:101:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
101 | if(forward) tmp = T.template triangularView<Upper>() * tmp;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from 'struct Eigen::internal::evaluator<const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >'
100 | struct evaluator<const T>
| ^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from 'struct Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>'
739 | CoeffReadCost = int(evaluator<Lhs>::CoeffReadCost) + int(evaluator<Rhs>::CoeffReadCost) + int(functor_traits<BinaryOp>::Cost),
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from 'struct Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> > >'
722 | struct evaluator<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:774:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >; Functor = sub_assign_op<double, double>]'
774 | SrcEvaluatorType srcEvaluator(src);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, true>; SrcXprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1> >, const Eigen::Block<const Eigen::Transpose<const Eigen::Matrix<double, -1, -1, 1, -1, -1> >, -1, -1, true> >; Functor = Eigen::internal::sub_assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/BlockHouseholder.h:102:19: required from 'void Eigen::internal::apply_block_householder_on_the_left(MatrixType&, const VectorsType&, const CoeffsType&, bool) [with MatrixType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; VectorsType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; CoeffsType = Eigen::VectorBlock<const Eigen::Matrix<double, -1, 1>, -1>]'
102 | else tmp = T.template triangularView<Upper>().adjoint() * tmp;
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Householder/HouseholderSequence.h:399:46: required from 'void Eigen::HouseholderSequence<VectorsType, CoeffsType, Side>::applyThisOnTheLeft(Dest&, Workspace&, bool) const [with Dest = Eigen::Matrix<double, -1, -1>; Workspace = Eigen::Matrix<double, 1, -1>; VectorsType = Eigen::Matrix<double, -1, -1>; CoeffsType = Eigen::Matrix<double, -1, 1>; int Side = 1]'
399 | apply_block_householder_on_the_left(sub_dst, sub_vecs, m_coeffs.segment(k, bs), !m_reverse);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:236:47: required from 'bool Eigen::internal::qr_preconditioner_impl<MatrixType, 2, 0, true>::run(Eigen::JacobiSVD<MatrixType, 2>&, const MatrixType&) [with MatrixType = Eigen::Matrix<double, -1, -1>]'
236 | m_qr.householderQ().applyThisOnTheLeft(svd.m_matrixV, m_workspace);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:692:30: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>& Eigen::JacobiSVD<MatrixType, QRPreconditioner>::compute(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
692 | m_qr_precond_morecols.run(*this, m_scaledMatrix);
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SVD/JacobiSVD.h:549:14: required from 'Eigen::JacobiSVD<MatrixType, QRPreconditioner>::JacobiSVD(const MatrixType&, unsigned int) [with _MatrixType = Eigen::Matrix<double, -1, -1>; int QRPreconditioner = 2; MatrixType = Eigen::Matrix<double, -1, -1>]'
549 | compute(matrix, computationOptions);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
SavitzkyGolayFilter.cpp:24:88: required from here
24 | Eigen::JacobiSVD<Eigen::MatrixXd> svd (A, Eigen::ComputeThinU | Eigen::ComputeThinV);
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:341:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c affinealignment.cpp -o affinealignment.o
affinealignment.cpp: In function 'double DIAlign::AffineAlignment::getOlapAffineAlignStartIndices(double*, double*, double*, int, int, int&, int&, DIAlign::Traceback::tbJump&)':
affinealignment.cpp:484:16: warning: 'MaxRowIndex' may be used uninitialized [-Wmaybe-uninitialized]
484 | OlapStartRow = MaxRowIndex;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~
affinealignment.cpp:436:7: note: 'MaxRowIndex' was declared here
436 | int MaxRowIndex, MaxColIndex;
| ^~~~~~~~~~~
affinealignment.cpp:485:16: warning: 'MaxColIndex' may be used uninitialized [-Wmaybe-uninitialized]
485 | OlapStartCol = MaxColIndex;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~
affinealignment.cpp:436:20: note: 'MaxColIndex' was declared here
436 | int MaxRowIndex, MaxColIndex;
| ^~~~~~~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c affinealignobj.cpp -o affinealignobj.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c alignment.cpp -o alignment.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c chromSimMatrix.cpp -o chromSimMatrix.o
chromSimMatrix.cpp: In function 'std::vector<double> DIAlign::SimilarityMatrix::perSampleEucLenVecOfVec(const std::vector<std::vector<double> >&)':
chromSimMatrix.cpp:32:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
32 | for (int i = 0; i < mag.size(); i++){
| ~~^~~~~~~~~~~~
chromSimMatrix.cpp: In function 'std::vector<double> DIAlign::SimilarityMatrix::perSampleSqrSumVecOfVec(const std::vector<std::vector<double> >&)':
chromSimMatrix.cpp:45:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
45 | for (int i = 0; i < mag.size(); i++){
| ~~^~~~~~~~~~~~
chromSimMatrix.cpp: In function 'std::vector<double> DIAlign::SimilarityMatrix::perSampleMeanVecOfVec(const std::vector<std::vector<double> >&)':
chromSimMatrix.cpp:57:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
57 | for (int i = 0; i < mean.size(); i++){
| ~~^~~~~~~~~~~~~
chromSimMatrix.cpp: In function 'std::vector<double> DIAlign::SimilarityMatrix::perSampleSumVecOfVec(const std::vector<std::vector<double> >&)':
chromSimMatrix.cpp:70:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
70 | for (int i = 0; i < sum.size(); i++){
| ~~^~~~~~~~~~~~
chromSimMatrix.cpp: In function 'DIAlign::SimMatrix DIAlign::SimilarityMatrix::getSimilarityMatrix(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, std::string, std::string, double, double, int)':
chromSimMatrix.cpp:414:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
414 | for(int i = 0; i < MASK.size(); i++){
| ~~^~~~~~~~~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c constrainMat.cpp -o constrainMat.o
constrainMat.cpp: In function 'void DIAlign::ConstrainMatrix::calcNoBeefMask2(DIAlign::SimMatrix&, std::vector<double>, std::vector<double>, std::vector<double>, int, bool)':
constrainMat.cpp:78:10: warning: unused variable 'mapped' [-Wunused-variable]
78 | double mapped = 0.0;
| ^~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gapPenalty.cpp -o gapPenalty.o
gapPenalty.cpp: In function 'double DIAlign::getGapPenalty(const SimMatrix&, double, std::string)':
gapPenalty.cpp:6:10: warning: 'gapPenalty' may be used uninitialized [-Wmaybe-uninitialized]
6 | double gapPenalty;
| ^~~~~~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c integrateArea.cpp -o integrateArea.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interface.cpp -o interface.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c miscell.cpp -o miscell.o
miscell.cpp: In function 'void DIAlign::xicIntersect(std::vector<std::vector<double> >&, std::vector<std::vector<double> >&)':
miscell.cpp:10:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
10 | for (unsigned int i = 0; i < len; i++){
| ~~^~~~~
miscell.cpp:15:29: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
15 | for(unsigned int i = 0; i < len; i++){
| ~~^~~~~
miscell.cpp:26:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
26 | for (unsigned int i = 0; i < len; i++){
| ~~^~~~~
miscell.cpp:39:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
39 | for (unsigned int i = 0; i < len; i++) len2[i] = intensity[i].size();
| ~~^~~~~
miscell.cpp: In function 'std::vector<std::vector<double> > DIAlign::imputeChromatogram(const std::vector<std::vector<double> >&, const std::vector<double>&, const std::vector<int>&)':
miscell.cpp:125:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
125 | for(int i =0; i< middle.size(); i++){
| ~^~~~~~~~~~~~~~~
miscell.cpp:131:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
131 | for(int i =0; i < (Anew.size()-1); i++){
| ~~^~~~~~~~~~~~~~~~~
miscell.cpp:139:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
139 | for(int j=0; j<result.size(); j++){
| ~^~~~~~~~~~~~~~
miscell.cpp: In function 'std::vector<int> DIAlign::getSkip(const std::vector<int>&, const std::vector<int>&)':
miscell.cpp:164:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
164 | for(int i = 0; i < index.size(); i++){
| ~~^~~~~~~~~~~~~~
miscell.cpp: In function 'void DIAlign::mergeIntensity(std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, double)':
miscell.cpp:221:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
221 | for(int i = 0; i< A.size(); i++){
| ~^~~~~~~~~~
miscell.cpp: In function 'void DIAlign::addFlankToLeft(const std::vector<double>&, std::vector<double>&, std::vector<double>&, const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, std::vector<int>&)':
miscell.cpp:250:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
250 | for(int i = 0; i< intenN.size(); i++){
| ~^~~~~~~~~~~~~~~
miscell.cpp: In function 'void DIAlign::addFlankToRight(const std::vector<double>&, std::vector<double>&, std::vector<double>&, const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, std::vector<int>&)':
miscell.cpp:277:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
277 | for(int i = 0; i< intenN.size(); i++){
| ~^~~~~~~~~~~~~~~
miscell.cpp: In function 'void DIAlign::addFlankToLeft1(const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, std::vector<int>&)':
miscell.cpp:288:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
288 | for(int i = 0; i< intenN.size(); i++){
| ~^~~~~~~~~~~~~~~
miscell.cpp: In function 'void DIAlign::addFlankToRight1(const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, std::vector<int>&)':
miscell.cpp:307:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
307 | for(int i = 0; i< intenN.size(); i++){
| ~^~~~~~~~~~~~~~~
miscell.cpp: In function 'std::vector<int> DIAlign::getMatchingIdx(const std::vector<double>&, const std::vector<double>&)':
miscell.cpp:318:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
318 | for(int i =0, j=0; i< tMain.size(); i++){
| ~^~~~~~~~~~~~~~
miscell.cpp:320:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
320 | for(; j<t.size();){
| ~^~~~~~~~~
miscell.cpp: In function 'std::vector<std::vector<double> > DIAlign::imputeChromatogram1(const std::vector<std::vector<double> >&, const std::vector<int>&, const std::vector<double>&, const std::vector<double>&)':
miscell.cpp:337:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
337 | for(int j = 0; j <A.size(); j++){
| ~~^~~~~~~~~
miscell.cpp:339:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
339 | for(int i = 0; i < temp.size(); i++){
| ~~^~~~~~~~~~~~~
miscell.cpp:353:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
353 | for(int i =0; i< middle.size(); i++){
| ~^~~~~~~~~~~~~~~
miscell.cpp:358:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
358 | for(int i =0; i < intensity.size(); i++){
| ~~^~~~~~~~~~~~~~~~~~
miscell.cpp:360:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
360 | for(int j=0; j<result.size(); j++){
| ~^~~~~~~~~~~~~~
miscell.cpp: At global scope:
miscell.cpp:53:19: warning: 'const bool DIAlign::lessZero(double)' defined but not used [-Wunused-function]
53 | static bool const lessZero(double a){
| ^~~~~~~~
In file included from miscell.h:9,
from miscell.cpp:3:
spline.h:390:10: warning: 'double DIAlign::{anonymous}::tk::spline::deriv(int, double) const' defined but not used [-Wunused-function]
390 | double spline::deriv(int order, double x) const
| ^~~~~~
spline.h:364:10: warning: 'double DIAlign::{anonymous}::tk::spline::operator()(double) const' defined but not used [-Wunused-function]
364 | double spline::operator() (double x) const
| ^~~~~~
spline.h:273:8: warning: 'void DIAlign::{anonymous}::tk::spline::set_points(const std::vector<double>&, const std::vector<double>&, bool)' defined but not used [-Wunused-function]
273 | void spline::set_points(const std::vector<double>& x,
| ^~~~~~
spline.h:261:8: warning: 'void DIAlign::{anonymous}::tk::spline::set_boundary(bd_type, double, bd_type, double, bool)' defined but not used [-Wunused-function]
261 | void spline::set_boundary(spline::bd_type left, double left_value,
| ^~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c run_alignment.cpp -o run_alignment.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simpleFcn.cpp -o simpleFcn.o
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spline.cpp -o spline.o
In file included from spline.cpp:1:
spline.h:390:10: warning: 'double DIAlign::{anonymous}::tk::spline::deriv(int, double) const' defined but not used [-Wunused-function]
390 | double spline::deriv(int order, double x) const
| ^~~~~~
spline.h:261:8: warning: 'void DIAlign::{anonymous}::tk::spline::set_boundary(bd_type, double, bd_type, double, bool)' defined but not used [-Wunused-function]
261 | void spline::set_boundary(spline::bd_type left, double left_value,
| ^~~~~~
g++ -std=gnu++14 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o
utils.cpp: In function 'double DIAlign::Utils::getQuantile(std::vector<double>, double)':
utils.cpp:48:9: warning: unused variable 'idx' [-Wunused-variable]
48 | int idx = n*(1-p);
| ^~~
g++ -shared -s -static-libgcc -o DIAlignR.dll tmp.def ChromatogramPeak.o DPosition.o MSChromatogram.o PeakIntegrator.o RcppExports.o Rmain.o SavitzkyGolayFilter.o affinealignment.o affinealignobj.o alignment.o chromSimMatrix.o constrainMat.o gapPenalty.o integrateArea.o interface.o miscell.o run_alignment.o simpleFcn.o spline.o utils.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-DIAlignR/00new/DIAlignR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
Package 'DIAlignR' is deprecated and will be removed from Bioconductor
version 3.22
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
Package 'DIAlignR' is deprecated and will be removed from Bioconductor
version 3.22
** testing if installed package keeps a record of temporary installation path
* DONE (DIAlignR)
DIAlignR.Rcheck/tests/testthat.Rout.fail
R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(DIAlignR)
Warning message:
In fun(libname, pkgname) :
Package 'DIAlignR' is deprecated and will be removed from Bioconductor
version 3.22
>
> test_check("DIAlignR")
[1] "hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt"
[2] "hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"
[3] "hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt"
Time difference of 0.08147097 secs
Time difference of 0.250999 secs
Time difference of 0.195473 secs
Time difference of 0.0327611 secs
Time difference of 0.01185894 secs
Time difference of 0.117157 secs
Time difference of 1.557345 secs
Time difference of 0.0306499 secs
Time difference of 0.4711599 secs
[1] "hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt"
[2] "hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"
Time difference of 0.01382804 secs
Time difference of 0.177237 secs
Time difference of 0.1052651 secs
Time difference of 0.02181005 secs
Time difference of 0.006296873 secs
Time difference of 0.05918002 secs
Time difference of 0.9068379 secs
Time difference of 0.01371217 secs
Time difference of 0.951483 secs
[1] "hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt"
[2] "hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"
[3] "hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt"
Time difference of 0.01830983 secs
Time difference of 0.200336 secs
Time difference of 0.09510303 secs
Time difference of 0.09646106 secs
Time difference of 0.008939028 secs
Time difference of 0.05321193 secs
Time difference of 1.10118 secs
Time difference of 0.02853298 secs
Time difference of 0.3644259 secs
[1] "hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt"
[2] "hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"
[3] "hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt"
Time difference of 0.02274704 secs
Time difference of 0.02143812 secs
Time difference of 0.0005249977 secs
Time difference of 0.08734703 secs
Time difference of 0.009212971 secs
Time difference of 0.04309487 secs
Time difference of 0.01216507 secs
Time difference of 0.00843215 secs
Time difference of 0.09128308 secs
[1] "hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"
[2] "hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt"
[1] "PestMix1_8Step1Plasma1SWATH20-50" "PestMix1_8Step8Plasma1SWATH20-50"
Time difference of 0.03933501 secs
Time difference of 0.03429008 secs
Time difference of 0.0095191 secs
Time difference of 0.01335883 secs
Time difference of 0.005858898 secs
Time difference of 0.03292298 secs
Time difference of 0.08147693 secs
Time difference of 0.00719595 secs
Time difference of 0.1592219 secs
[1] "chludwig_K150309_004b_SW_1_16" "chludwig_K150309_008_SW_1_4"
[3] "chludwig_K150309_013_SW_0"
Time difference of 0.009459019 secs
Time difference of 0.01204705 secs
Time difference of 0.001330137 secs
Time difference of 0.0196259 secs
Time difference of 0.01048493 secs
Time difference of 0.07632399 secs
Time difference of 0.006227016 secs
Time difference of 0.02645898 secs
Time difference of 0.292444 secs
<simpleWarning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, drop.square = drop.square, normalize = normalize, statistics = control$statistics, surface = control$surface, cell = control$cell, iterations = iterations, iterTrace = control$iterTrace, trace.hat = control$trace.hat): span too small. fewer data values than degrees of freedom.>
<simpleWarning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, drop.square = drop.square, normalize = normalize, statistics = control$statistics, surface = control$surface, cell = control$cell, iterations = iterations, iterTrace = control$iterTrace, trace.hat = control$trace.hat): span too small. fewer data values than degrees of freedom.>
<simpleWarning in sqrt(sum.squares/one.delta): NaNs produced>
<simpleError in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, drop.square = drop.square, normalize = normalize, statistics = control$statistics, surface = control$surface, cell = control$cell, iterations = iterations, iterTrace = control$iterTrace, trace.hat = control$trace.hat): span is too small>
runName
run0 hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt
run1 hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt
run2 hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt
Time difference of 0.1097569 secs
Time difference of 0.02194381 secs
Time difference of 0.002974987 secs
Time difference of 0.01263094 secs
Time difference of 0.06295204 secs
Time difference of 0.01817703 secs
Time difference of 0.02464199 secs
Time difference of 0.1095781 secs
runName
run0 hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt
run1 hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt
run2 hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt
Time difference of 0.04190207 secs
[1] "run0 run1\nrun2 run2"
Time difference of 0.644743 secs
Time difference of 0.1471391 secs
Time difference of 0.01308703 secs
Time difference of 0.07688618 secs
Time difference of 1.53786 secs
Time difference of 0.02338791 secs
Time difference of 0.438391 secs
runName
run0 hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt
run1 hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt
run2 hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt
Time difference of 0.08084989 secs
Time difference of 1.979269 secs
Time difference of 17.68915 secs
Time difference of 0.3670661 secs
runName
run0 hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt
run1 hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt
run2 hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt
Time difference of 0.09722996 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_prog1.RData"
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_0_2.rds"
[1] "progTree1 is done."
Time difference of 1.132194 secs
Time difference of 0.3614199 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_1_2.rds"
Time difference of 0.688602 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_2_2.rds"
Time difference of 0.316654 secs
Time difference of 0.24103 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_all_2.rds"
Time difference of 0.2286501 secs
runName
run0 hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt
run1 hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt
run2 hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt
Time difference of 0.07586789 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_prog1.RData"
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_0_2.rds"
[1] "progTree1 is done."
Time difference of 1.174069 secs
Time difference of 0.3917122 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_1_2.rds"
Time difference of 0.48211 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_2_2.rds"
Time difference of 0.4502201 secs
Time difference of 0.01186585 secs
[1] "Written E:/biocbuild/bbs-3.21-bioc/R/library/DIAlignR/extdata/temp_all_2.rds"
Error : Unable to find conda binary. Is Anaconda installed?
Error : Unable to find conda binary. Is Anaconda installed?
Error : Unable to find conda binary. Is Anaconda installed?
[ FAIL 7 | WARN 440 | SKIP 8 | PASS 625 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• empty test (5): 'test_get_filenames.R:77:1', 'test_get_filenames.R:82:1',
'test_utils.R:200:1', 'test_utils.R:203:1', 'test_utils.R:206:1'
• ropenms not available for testing. A conda environment with name TricEnvr is
MUST for testing. (3): 'test_pyopenms.R:4:3', 'test_pyopenms.R:8:3',
'test_pyopenms.R:27:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_align_dia_runs.R:122:3'): test_getAlignObjs ──────────────────
outData[[2]][["4618"]][["run1_run2"]][["ref"]] not equal to lapply(...).
Component 1: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 2: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 3: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 4: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 5: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 6: Attributes: < Component 2: Component 2: 2 string mismatches >
── Failure ('test_align_dia_runs.R:124:3'): test_getAlignObjs ──────────────────
outData[[2]][["4618"]][["run1_run2"]][["eXp"]] not equal to lapply(...).
Component 1: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 2: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 3: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 4: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 5: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 6: Attributes: < Component 2: Component 2: 2 string mismatches >
── Failure ('test_get_peaks_chromatograms.R:48:3'): test_getXICs4AlignObj ──────
outData[["hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt"]][["4618"]] not equal to lapply(XICs[[runs[["run0"]]]][["4618"]], as.matrix).
Component 1: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 2: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 3: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 4: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 5: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 6: Attributes: < Component 2: Component 2: 2 string mismatches >
── Failure ('test_get_peaks_chromatograms.R:49:3'): test_getXICs4AlignObj ──────
outData[["hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt"]][["4618"]] not equal to lapply(XICs[[runs[["run1"]]]][["4618"]], as.matrix).
Component 1: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 2: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 3: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 4: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 5: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 6: Attributes: < Component 2: Component 2: 2 string mismatches >
── Failure ('test_get_peaks_chromatograms.R:68:3'): test_getXICs ───────────────
outData[["hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt"]][["4618"]] not equal to lapply(...).
Component 1: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 2: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 3: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 4: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 5: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 6: Attributes: < Component 2: Component 2: 2 string mismatches >
── Failure ('test_get_peaks_chromatograms.R:70:3'): test_getXICs ───────────────
outData[["hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt"]][["4618"]] not equal to lapply(...).
Component 1: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 2: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 3: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 4: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 5: Attributes: < Component 2: Component 2: 2 string mismatches >
Component 6: Attributes: < Component 2: Component 2: 2 string mismatches >
── Error ('test_utils.R:76:13'): test_getRefExpFeatureMap ──────────────────────
Error in `is.na.integer64(current)`: REAL() can only be applied to a 'numeric', not a 'integer'
Backtrace:
▆
1. └─testthat::expect_equal(outData[[1]], expData, tolerance = 1e-04) at test_utils.R:76:13
2. ├─testthat::compare(act$val, exp$val, ..., tolerance = tolerance)
3. └─testthat:::compare.default(act$val, exp$val, ..., tolerance = tolerance)
4. ├─base::all.equal(x, y, ...)
5. └─data.table:::all.equal.data.table(x, y, ...)
6. ├─base::all.equal(x, y, tolerance = tolerance, ..., check.attributes = check.attributes)
7. └─bit64::all.equal.integer64(...)
8. ├─base::is.na(current)
9. └─bit64::is.na.integer64(current)
[ FAIL 7 | WARN 440 | SKIP 8 | PASS 625 ]
Error: Test failures
Execution halted
DIAlignR.Rcheck/DIAlignR-Ex.timings
| name | user | system | elapsed | |
| MSTperBatch | 0 | 0 | 0 | |
| addFlankToLeft | 0 | 0 | 0 | |
| addFlankToRight | 0 | 0 | 0 | |
| addXIC | 0 | 0 | 0 | |
| alignChromatogramsCpp | 0.01 | 0.01 | 0.03 | |
| alignTargetedRuns | 6.78 | 0.13 | 6.95 | |
| alignToMaster | 1.92 | 0.03 | 1.95 | |
| alignToRef | 0 | 0 | 0 | |
| alignToRefMST | 0 | 0 | 0 | |
| alignedXIC | 0.07 | 0.01 | 0.08 | |
| analytesFromFeatures | 0.04 | 0.00 | 0.05 | |
| approxFill | 0 | 0 | 0 | |
| areaIntegrator | 0 | 0 | 0 | |
| blobXICs | 0.00 | 0.02 | 0.01 | |
| calculateIntensity | 0.00 | 0.01 | 0.02 | |
| checkOverlap | 0 | 0 | 0 | |
| checkParams | 0 | 0 | 0 | |
| childXIC | 0.07 | 0.04 | 0.09 | |
| childXICs | 0.59 | 0.03 | 0.63 | |
| constrainSimCpp | 0 | 0 | 0 | |
| createMZML | 0.00 | 0.01 | 0.01 | |
| createSqMass | 0 | 0 | 0 | |
| dialignrLoess | 0 | 0 | 0 | |
| doAffineAlignmentCpp | 0 | 0 | 0 | |
| doAlignmentCpp | 0 | 0 | 0 | |
| extractXIC_group | 0.72 | 0.03 | 0.75 | |
| extractXIC_group2 | 0 | 0 | 0 | |
| fetchAnalytesInfo | 0.01 | 0.00 | 0.02 | |
| fetchFeaturesFromRun | 0.00 | 0.02 | 0.01 | |
| fetchPeptidesInfo | 0 | 0 | 0 | |
| fetchPeptidesInfo2 | 0.02 | 0.00 | 0.02 | |
| fetchPrecursorsInfo | 0 | 0 | 0 | |
| fetchTransitionsFromRun | 0.01 | 0.00 | 0.01 | |
| filenamesFromMZML | 0 | 0 | 0 | |
| filenamesFromOSW | 0 | 0 | 0 | |
| getAlignObj | 0.04 | 0.00 | 0.04 | |
| getAlignObjs | 1.20 | 0.03 | 1.26 | |
| getAlignedFigs | 0.16 | 0.03 | 0.19 | |
| getAlignedIndices | 0.01 | 0.00 | 0.01 | |
| getAlignedTimes | 0.03 | 0.00 | 0.04 | |
| getAlignedTimesCpp | 0.02 | 0.00 | 0.01 | |
| getAlignedTimesFast | 0.01 | 0.00 | 0.02 | |
| getBaseGapPenaltyCpp | 0 | 0 | 0 | |
| getChildFeature | 0.03 | 0.03 | 0.06 | |
| getChildXICpp | 0.02 | 0.00 | 0.02 | |
| getChildXICs | 0.81 | 0.00 | 0.81 | |
| getChromSimMatCpp | 0 | 0 | 0 | |
| getChromatogramIndices | 0.11 | 0.00 | 0.11 | |
| getFeatures | 0.05 | 0.00 | 0.04 | |
| getGlobalAlignMaskCpp | 0 | 0 | 0 | |
| getGlobalAlignment | 0.01 | 0.00 | 0.02 | |
| getGlobalFits | 0.32 | 0.05 | 0.36 | |
| getLOESSfit | 0 | 0 | 0 | |
| getLinearfit | 0.01 | 0.00 | 0.01 | |
| getMST | 0 | 0 | 0 | |
| getMZMLpointers | 0.02 | 0.00 | 0.02 | |
| getMappedRT | 0.03 | 0.00 | 0.03 | |
| getMultipeptide | 1.39 | 0.02 | 1.41 | |
| getNativeIDs | 0.02 | 0.00 | 0.01 | |
| getNodeIDs | 0 | 0 | 0 | |
| getNodeRun | 0.78 | 0.03 | 0.81 | |
| getOswAnalytes | 0.02 | 0.00 | 0.02 | |
| getOswFiles | 0.01 | 0.00 | 0.01 | |
| getPeptideScores | 0.04 | 0.00 | 0.03 | |
| getPrecursorByID | 0.00 | 0.01 | 0.02 | |
| getPrecursorIndices | 0.07 | 0.02 | 0.09 | |
| getPrecursors | 0.03 | 0.00 | 0.03 | |
| getRSE | 0.00 | 0.01 | 0.02 | |
| getRTdf | 0.02 | 0.00 | 0.02 | |
| getRefExpFeatureMap | 0.33 | 0.03 | 0.36 | |
| getRefRun | 0.40 | 0.04 | 0.43 | |
| getRunNames | 0.02 | 0.00 | 0.02 | |
| getSeqSimMatCpp | 0 | 0 | 0 | |
| getTransitions | 0.14 | 0.01 | 0.19 | |
| getTree | 0.02 | 0.02 | 0.03 | |
| getXICs | 0.11 | 0.00 | 0.11 | |
| getXICs4AlignObj | 0.04 | 0.01 | 0.06 | |
| get_ropenms | 0 | 0 | 0 | |
| imputeChromatogram | 0.03 | 0.00 | 0.03 | |
| ipfReassignFDR | 0 | 0 | 0 | |
| mapIdxToTime | 0 | 0 | 0 | |
| mappedRTfromAlignObj | 0 | 0 | 0 | |
| mergeXIC | 0.02 | 0.00 | 0.02 | |
| mstAlignRuns | 1.98 | 0.07 | 2.06 | |
| mstScript1 | 0.54 | 0.00 | 0.53 | |
| mstScript2 | 2.34 | 0.14 | 2.50 | |
| nrDesc | 0 | 0 | 0 | |
| otherChildXICpp | 0.00 | 0.01 | 0.02 | |
| paramsDIAlignR | 0 | 0 | 0 | |
| perBatch | 0 | 0 | 0 | |
| pickNearestFeature | 0 | 0 | 0 | |
| plotAlignedAnalytes | 0.74 | 0.00 | 0.74 | |
| plotAlignmentPath | 0.45 | 0.08 | 0.53 | |
| plotAnalyteXICs | 0.47 | 0.02 | 0.48 | |
| plotXICgroup | 0.39 | 0.03 | 0.42 | |
| populateReferenceExperimentFeatureAlignmentMap | 0.01 | 0.00 | 0.01 | |
| progAlignRuns | 0 | 0 | 0 | |
| readMzMLHeader | 0 | 0 | 0 | |
| readSqMassHeader | 0 | 0 | 0 | |
| recalculateIntensity | 0.25 | 0.01 | 0.27 | |
| reduceXICs | 0.08 | 0.00 | 0.07 | |
| script1 | 0.64 | 0.03 | 0.68 | |
| script2 | 2.36 | 0.07 | 2.42 | |
| setAlignmentRank | 0.00 | 0.01 | 0.01 | |
| sgolayCpp | 0.01 | 0.00 | 0.02 | |
| sgolayFill | 0 | 0 | 0 | |
| smoothSingleXIC | 0 | 0 | 0 | |
| smoothXICs | 0.00 | 0.02 | 0.01 | |
| splineFill | 0 | 0 | 0 | |
| splineFillCpp | 0 | 0 | 0 | |
| traverseDown | 1.61 | 0.09 | 1.71 | |
| traverseMST | 0 | 0 | 0 | |
| traverseUp | 1.86 | 0.02 | 1.89 | |
| trfrParentFeature | 0.04 | 0.00 | 0.04 | |
| trimXICs | 0.00 | 0.01 | 0.02 | |
| uncompressVec | 0.02 | 0.00 | 0.02 | |
| updateFileInfo | 0.01 | 0.00 | 0.01 | |
| writeOutFeatureAlignmentMap | 0 | 0 | 0 | |
| writeTables | 0.02 | 0.00 | 0.02 | |