| Back to Workflows build report for BioC 3.20 |
This page was generated on 2024-11-22 16:30 -0500 (Fri, 22 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4737 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4480 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4508 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 17/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| maEndToEnd 2.26.0 (landing page) Stefanie Reisenauer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the maEndToEnd package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maEndToEnd |
| Version: 2.26.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd |
| StartedAt: 2024-11-22 13:10:34 -0500 (Fri, 22 Nov 2024) |
| EndedAt: 2024-11-22 13:20:18 -0500 (Fri, 22 Nov 2024) |
| EllapsedTime: 583.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd ### ############################################################################## ############################################################################## * checking for file ‘maEndToEnd/DESCRIPTION’ ... OK * preparing ‘maEndToEnd’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MA-Workflow.Rmd’ using rmarkdown trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/164_I_.CEL' Content type 'unknown' length 11127291 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/164_II.CEL' Content type 'unknown' length 11140543 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/183_I.CEL' Content type 'unknown' length 11132883 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/183_II.CEL' Content type 'unknown' length 11143643 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2114_I.CEL' Content type 'unknown' length 11153863 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2114_II.CEL' Content type 'unknown' length 11145363 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2209_A.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2209_B.CEL' Content type 'unknown' length 11139827 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2255_I.CEL' Content type 'unknown' length 11129107 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2255_II.CEL' Content type 'unknown' length 11149443 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2400_I.CEL' Content type 'unknown' length 11141903 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2400_II.CEL' Content type 'unknown' length 11145051 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2424_A.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2424_B.CEL' Content type 'unknown' length 11152051 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/255_I.CEL' Content type 'unknown' length 11134823 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/255_II.CEL' Content type 'unknown' length 11148839 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2826_I.CEL' Content type 'unknown' length 11172699 bytes (10.7 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2826_II.CEL' Content type 'unknown' length 11167763 bytes (10.7 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2853_I.CEL' Content type 'unknown' length 11139691 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2853_II.CEL' Content type 'unknown' length 11156107 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2978_I.CEL' Content type 'unknown' length 11158567 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2978_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2987_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2987_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2992_I.CEL' Content type 'unknown' length 11137547 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2992_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2995_I.CEL' Content type 'unknown' length 11129827 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2995_II.CEL' Content type 'unknown' length 11139707 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/321_I.CEL' Content type 'unknown' length 11145439 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/321_II.CEL' Content type 'unknown' length 11174727 bytes (10.7 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3222_I.CEL' Content type 'unknown' length 11137815 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3222_II.CEL' Content type 'unknown' length 11132307 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3223_I.CEL' Content type 'unknown' length 11142335 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3223_II.CEL' Content type 'unknown' length 11156763 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3226_I.CEL' Content type 'unknown' length 11129139 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3226_II.CEL' Content type 'unknown' length 11141699 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3233_I.CEL' Content type 'unknown' length 11132907 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3233_II.CEL' Content type 'unknown' length 11141551 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3258_I.CEL' Content type 'unknown' length 11162219 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3258_II.CEL' Content type 'unknown' length 11142571 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3259_I.CEL' Content type 'unknown' length 11139091 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3259_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3262_I.CEL' Content type 'unknown' length 11158059 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3262_II.CEL' Content type 'unknown' length 11167211 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3266_I.CEL' Content type 'unknown' length 11155675 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3266_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3269_I.CEL' Content type 'unknown' length 11152163 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3269_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3271_I.CEL' Content type 'unknown' length 11159931 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3271_II.CEL' Content type 'unknown' length 11158883 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3302_I.CEL' Content type 'unknown' length 11145911 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3302_II.CEL' Content type 'unknown' length 11170603 bytes (10.7 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3332_I.CEL' Content type 'unknown' length 11142627 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3332_II.CEL' Content type 'unknown' length 11187423 bytes (10.7 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/848_A.CEL' Content type 'unknown' length 11136167 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/848_B.CEL' Content type 'unknown' length 11156799 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/888_I.CEL' Content type 'unknown' length 11154163 bytes (10.6 MB) ================================================== trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/888_II.CEL' Content type 'unknown' length 11138831 bytes (10.6 MB) ================================================== trying URL 'https://www.ebi.ac.uk/biostudies/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt' Content type 'text/plain; charset=UTF-8' length 22516 bytes (21 KB) ================================================== downloaded 21 KB Quitting from lines 368-372 [importCelfiles] (MA-Workflow.Rmd) Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics: These do not exist: /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/2209_A.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/2424_A.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/2978_II.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/2987_I.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/2987_II.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/2992_II.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/3259_II.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/3266_II.CEL /Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/3269_II.CEL --- failed re-building ‘MA-Workflow.Rmd’ SUMMARY: processing the following file failed: ‘MA-Workflow.Rmd’ Error: Vignette re-building failed. Execution halted