Gabriele Sales
| Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/spatialDE |
| git_branch: devel |
| git_last_commit: 8c1ba06 |
| git_last_commit_date: 2024-04-30 11:36:37 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-06-11 15:41 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1975/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| spatialDE 1.11.0 (landing page) Gabriele Sales
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the spatialDE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialDE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: spatialDE |
| Version: 1.11.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:spatialDE.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings spatialDE_1.11.0.tar.gz |
| StartedAt: 2024-06-10 10:12:33 -0400 (Mon, 10 Jun 2024) |
| EndedAt: 2024-06-10 10:23:06 -0400 (Mon, 10 Jun 2024) |
| EllapsedTime: 632.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: spatialDE.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:spatialDE.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings spatialDE_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/spatialDE.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'spatialDE/DESCRIPTION' ... OK
* this is package 'spatialDE' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spatialDE' can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See 'F:/biocbuild/bbs-3.20-bioc/meat/spatialDE.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
spatial_patterns 12.74 0.39 6.56
FSV_sig 4.37 2.21 39.28
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'F:/biocbuild/bbs-3.20-bioc/meat/spatialDE.Rcheck/00check.log'
for details.
spatialDE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL spatialDE ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'spatialDE' ... ** using non-staged installation via StagedInstall field ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (spatialDE)
spatialDE.Rcheck/tests/testthat.Rout
R version 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(spatialDE)
>
> test_check("spatialDE")
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 310.84it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 310.13it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 3.19it/s]
0%| | 0/100 [00:00<?, ?it/s][A
19%|█▉ | 19/100 [00:00<00:00, 172.98it/s][A
42%|████▏ | 42/100 [00:00<00:00, 193.96it/s][A
66%|██████▌ | 66/100 [00:00<00:00, 208.24it/s][A
100%|██████████| 100/100 [00:00<00:00, 257.45it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:03, 2.63it/s]
0%| | 0/100 [00:00<?, ?it/s][A
28%|██▊ | 28/100 [00:00<00:00, 279.36it/s][A
59%|█████▉ | 59/100 [00:00<00:00, 294.21it/s][A
91%|█████████ | 91/100 [00:00<00:00, 292.24it/s][A
[A
Models: 30%|███ | 3/10 [00:01<00:02, 2.70it/s]
0%| | 0/100 [00:00<?, ?it/s][A
26%|██▌ | 26/100 [00:00<00:00, 235.73it/s][A
52%|█████▏ | 52/100 [00:00<00:00, 236.27it/s][A
83%|████████▎ | 83/100 [00:00<00:00, 257.25it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:02, 2.68it/s]
0%| | 0/100 [00:00<?, ?it/s][A
30%|███ | 30/100 [00:00<00:00, 273.03it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 283.75it/s][A
91%|█████████ | 91/100 [00:00<00:00, 274.06it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 2.71it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 282.22it/s][A
61%|██████ | 61/100 [00:00<00:00, 276.10it/s][A
89%|████████▉ | 89/100 [00:00<00:00, 211.06it/s][A
[A
Models: 60%|██████ | 6/10 [00:02<00:01, 2.58it/s]
0%| | 0/100 [00:00<?, ?it/s][A
29%|██▉ | 29/100 [00:00<00:00, 263.99it/s][A
56%|█████▌ | 56/100 [00:00<00:00, 252.18it/s][A
86%|████████▌ | 86/100 [00:00<00:00, 261.75it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.60it/s]
0%| | 0/100 [00:00<?, ?it/s][A
21%|██ | 21/100 [00:00<00:00, 191.68it/s][A
51%|█████ | 51/100 [00:00<00:00, 239.61it/s][A
75%|███████▌ | 75/100 [00:00<00:00, 191.88it/s][A
95%|█████████▌| 95/100 [00:00<00:00, 188.68it/s][A
[A
Models: 80%|████████ | 8/10 [00:03<00:00, 2.34it/s]
0%| | 0/100 [00:00<?, ?it/s][A
28%|██▊ | 28/100 [00:00<00:00, 254.90it/s][A
54%|█████▍ | 54/100 [00:00<00:00, 255.00it/s][A
80%|████████ | 80/100 [00:00<00:00, 246.44it/s][A
[A
Models: 90%|█████████ | 9/10 [00:03<00:00, 2.42it/s]
0%| | 0/100 [00:00<?, ?it/s][A
38%|███▊ | 38/100 [00:00<00:00, 347.43it/s][A
73%|███████▎ | 73/100 [00:00<00:00, 330.41it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 2.65it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 2.60it/s]
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
35%|███▌ | 35/100 [00:00<00:00, 320.00it/s][A
86%|████████▌ | 86/100 [00:00<00:00, 405.03it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 3.99it/s]
0%| | 0/100 [00:00<?, ?it/s][A
38%|███▊ | 38/100 [00:00<00:00, 347.41it/s][A
75%|███████▌ | 75/100 [00:00<00:00, 341.18it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.72it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 321.08it/s][A
66%|██████▌ | 66/100 [00:00<00:00, 323.88it/s][A
99%|█████████▉| 99/100 [00:00<00:00, 313.36it/s][A
[A
Models: 30%|███ | 3/10 [00:00<00:02, 3.46it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 300.43it/s][A
67%|██████▋ | 67/100 [00:00<00:00, 306.55it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:01, 3.28it/s]
0%| | 0/100 [00:00<?, ?it/s][A
36%|███▌ | 36/100 [00:00<00:00, 329.12it/s][A
69%|██████▉ | 69/100 [00:00<00:00, 325.41it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 3.25it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 310.85it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 309.31it/s][A
[A
Models: 60%|██████ | 6/10 [00:01<00:01, 3.23it/s]
0%| | 0/100 [00:00<?, ?it/s][A
30%|███ | 30/100 [00:00<00:00, 273.12it/s][A
58%|█████▊ | 58/100 [00:00<00:00, 263.06it/s][A
85%|████████▌ | 85/100 [00:00<00:00, 225.77it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.88it/s]
0%| | 0/100 [00:00<?, ?it/s][A
26%|██▌ | 26/100 [00:00<00:00, 237.71it/s][A
55%|█████▌ | 55/100 [00:00<00:00, 253.22it/s][A
90%|█████████ | 90/100 [00:00<00:00, 283.66it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.81it/s]
0%| | 0/100 [00:00<?, ?it/s][A
38%|███▊ | 38/100 [00:00<00:00, 344.49it/s][A
73%|███████▎ | 73/100 [00:00<00:00, 330.14it/s][A
[A
Models: 90%|█████████ | 9/10 [00:02<00:00, 2.88it/s]
0%| | 0/100 [00:00<?, ?it/s][A
37%|███▋ | 37/100 [00:00<00:00, 338.30it/s][A
72%|███████▏ | 72/100 [00:00<00:00, 342.44it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 3.06it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 3.11it/s]
C:\Users\BIOCBU~1\AppData\Local\R\cache\R\basilisk\117~1.0\SPATIA~1\111~1.0\env\lib\site-packages\pandas\core\internals\blocks.py:351: RuntimeWarning: invalid value encountered in log
result = func(self.values, **kwargs)
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 300.45it/s][A
77%|███████▋ | 77/100 [00:00<00:00, 360.24it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 3.72it/s]
0%| | 0/100 [00:00<?, ?it/s][A
41%|████ | 41/100 [00:00<00:00, 380.48it/s][A
80%|████████ | 80/100 [00:00<00:00, 366.32it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.63it/s]
0%| | 0/100 [00:00<?, ?it/s][A
33%|███▎ | 33/100 [00:00<00:00, 296.58it/s][A
65%|██████▌ | 65/100 [00:00<00:00, 266.78it/s][A
[A
Models: 30%|███ | 3/10 [00:00<00:02, 3.31it/s]
0%| | 0/100 [00:00<?, ?it/s][A
25%|██▌ | 25/100 [00:00<00:00, 228.57it/s][A
58%|█████▊ | 58/100 [00:00<00:00, 270.90it/s][A
90%|█████████ | 90/100 [00:00<00:00, 280.78it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:01, 3.02it/s]
0%| | 0/100 [00:00<?, ?it/s][A
24%|██▍ | 24/100 [00:00<00:00, 217.51it/s][A
49%|████▉ | 49/100 [00:00<00:00, 224.00it/s][A
79%|███████▉ | 79/100 [00:00<00:00, 246.41it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 2.83it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 310.85it/s][A
67%|██████▋ | 67/100 [00:00<00:00, 304.71it/s][A
100%|██████████| 100/100 [00:00<00:00, 303.34it/s][A
[A
Models: 60%|██████ | 6/10 [00:01<00:01, 2.90it/s]
0%| | 0/100 [00:00<?, ?it/s][A
35%|███▌ | 35/100 [00:00<00:00, 318.62it/s][A
68%|██████▊ | 68/100 [00:00<00:00, 308.68it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.99it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 312.41it/s][A
66%|██████▌ | 66/100 [00:00<00:00, 300.70it/s][A
100%|██████████| 100/100 [00:00<00:00, 304.74it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 3.01it/s]
0%| | 0/100 [00:00<?, ?it/s][A
38%|███▊ | 38/100 [00:00<00:00, 347.42it/s][A
74%|███████▍ | 74/100 [00:00<00:00, 335.82it/s][A
[A
Models: 90%|█████████ | 9/10 [00:02<00:00, 3.11it/s]
0%| | 0/100 [00:00<?, ?it/s][A
39%|███▉ | 39/100 [00:00<00:00, 371.59it/s][A
80%|████████ | 80/100 [00:00<00:00, 364.47it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 3.28it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 3.14it/s]
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
52%|█████▏ | 52/100 [00:00<00:00, 475.40it/s][A
100%|██████████| 100/100 [00:00<00:00, 387.75it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 3.99it/s]
0%| | 0/100 [00:00<?, ?it/s][A
30%|███ | 30/100 [00:00<00:00, 274.28it/s][A
58%|█████▊ | 58/100 [00:00<00:00, 262.87it/s][A
85%|████████▌ | 85/100 [00:00<00:00, 255.57it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:02, 3.00it/s]
0%| | 0/100 [00:00<?, ?it/s][A
26%|██▌ | 26/100 [00:00<00:00, 236.70it/s][A
51%|█████ | 51/100 [00:00<00:00, 231.92it/s][A
76%|███████▌ | 76/100 [00:00<00:00, 229.55it/s][A
[A
Models: 30%|███ | 3/10 [00:01<00:02, 2.67it/s]
0%| | 0/100 [00:00<?, ?it/s][A
23%|██▎ | 23/100 [00:00<00:00, 220.57it/s][A
48%|████▊ | 48/100 [00:00<00:00, 218.70it/s][A
71%|███████ | 71/100 [00:00<00:00, 214.88it/s][A
96%|█████████▌| 96/100 [00:00<00:00, 219.89it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:02, 2.46it/s]
0%| | 0/100 [00:00<?, ?it/s][A
25%|██▌ | 25/100 [00:00<00:00, 228.55it/s][A
48%|████▊ | 48/100 [00:00<00:00, 217.24it/s][A
72%|███████▏ | 72/100 [00:00<00:00, 218.24it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 210.80it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:02, 2.36it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 283.41it/s][A
62%|██████▏ | 62/100 [00:00<00:00, 282.71it/s][A
96%|█████████▌| 96/100 [00:00<00:00, 295.55it/s][A
[A
Models: 60%|██████ | 6/10 [00:02<00:01, 2.56it/s]
0%| | 0/100 [00:00<?, ?it/s][A
35%|███▌ | 35/100 [00:00<00:00, 337.23it/s][A
71%|███████ | 71/100 [00:00<00:00, 321.65it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.74it/s]
0%| | 0/100 [00:00<?, ?it/s][A
34%|███▍ | 34/100 [00:00<00:00, 309.50it/s][A
67%|██████▋ | 67/100 [00:00<00:00, 304.93it/s][A
98%|█████████▊| 98/100 [00:00<00:00, 294.04it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.78it/s]
0%| | 0/100 [00:00<?, ?it/s][A
39%|███▉ | 39/100 [00:00<00:00, 356.57it/s][A
75%|███████▌ | 75/100 [00:00<00:00, 290.79it/s][A
[A
Models: 90%|█████████ | 9/10 [00:03<00:00, 2.86it/s]
0%| | 0/100 [00:00<?, ?it/s][A
39%|███▉ | 39/100 [00:00<00:00, 356.57it/s][A
75%|███████▌ | 75/100 [00:00<00:00, 313.19it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 3.00it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 2.79it/s]
Models: 0%| | 0/10 [00:00<?, ?it/s]
0%| | 0/100 [00:00<?, ?it/s][A
44%|████▍ | 44/100 [00:00<00:00, 402.32it/s][A
85%|████████▌ | 85/100 [00:00<00:00, 354.62it/s][A
[A
Models: 10%|█ | 1/10 [00:00<00:02, 3.36it/s]
0%| | 0/100 [00:00<?, ?it/s][A
26%|██▌ | 26/100 [00:00<00:00, 237.71it/s][A
50%|█████ | 50/100 [00:00<00:00, 226.40it/s][A
73%|███████▎ | 73/100 [00:00<00:00, 205.65it/s][A
94%|█████████▍| 94/100 [00:00<00:00, 200.14it/s][A
[A
Models: 20%|██ | 2/10 [00:00<00:03, 2.40it/s]
0%| | 0/100 [00:00<?, ?it/s][A
24%|██▍ | 24/100 [00:00<00:00, 219.41it/s][A
46%|████▌ | 46/100 [00:00<00:00, 208.14it/s][A
67%|██████▋ | 67/100 [00:00<00:00, 188.50it/s][A
96%|█████████▌| 96/100 [00:00<00:00, 216.88it/s][A
[A
Models: 30%|███ | 3/10 [00:01<00:03, 2.27it/s]
0%| | 0/100 [00:00<?, ?it/s][A
37%|███▋ | 37/100 [00:00<00:00, 338.29it/s][A
71%|███████ | 71/100 [00:00<00:00, 321.36it/s][A
[A
Models: 40%|████ | 4/10 [00:01<00:02, 2.56it/s]
0%| | 0/100 [00:00<?, ?it/s][A
29%|██▉ | 29/100 [00:00<00:00, 283.53it/s][A
60%|██████ | 60/100 [00:00<00:00, 296.68it/s][A
96%|█████████▌| 96/100 [00:00<00:00, 312.09it/s][A
[A
Models: 50%|█████ | 5/10 [00:01<00:01, 2.72it/s]
0%| | 0/100 [00:00<?, ?it/s][A
37%|███▋ | 37/100 [00:00<00:00, 336.83it/s][A
73%|███████▎ | 73/100 [00:00<00:00, 332.31it/s][A
[A
Models: 60%|██████ | 6/10 [00:02<00:01, 2.90it/s]
0%| | 0/100 [00:00<?, ?it/s][A
36%|███▌ | 36/100 [00:00<00:00, 329.03it/s][A
70%|███████ | 70/100 [00:00<00:00, 318.34it/s][A
[A
Models: 70%|███████ | 7/10 [00:02<00:01, 2.99it/s]
0%| | 0/100 [00:00<?, ?it/s][A
31%|███ | 31/100 [00:00<00:00, 283.42it/s][A
60%|██████ | 60/100 [00:00<00:00, 203.70it/s][A
83%|████████▎ | 83/100 [00:00<00:00, 206.24it/s][A
[A
Models: 80%|████████ | 8/10 [00:02<00:00, 2.69it/s]
0%| | 0/100 [00:00<?, ?it/s][A
25%|██▌ | 25/100 [00:00<00:00, 228.57it/s][A
49%|████▉ | 49/100 [00:00<00:00, 222.62it/s][A
84%|████████▍ | 84/100 [00:00<00:00, 266.99it/s][A
[A
Models: 90%|█████████ | 9/10 [00:03<00:00, 2.64it/s]
0%| | 0/100 [00:00<?, ?it/s][A
30%|███ | 30/100 [00:00<00:00, 273.08it/s][A
63%|██████▎ | 63/100 [00:00<00:00, 289.90it/s][A
92%|█████████▏| 92/100 [00:00<00:00, 261.09it/s][A
[A
Models: 100%|██████████| 10/10 [00:03<00:00, 2.65it/s]
Models: 100%|██████████| 10/10 [00:03<00:00, 2.67it/s]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
>
> proc.time()
user system elapsed
48.71 17.84 82.59
spatialDE.Rcheck/spatialDE-Ex.timings
| name | user | system | elapsed | |
| FSV_sig | 4.37 | 2.21 | 39.28 | |
| mockSVG | 0.36 | 0.03 | 0.39 | |
| modelSearch | 2.36 | 0.24 | 1.45 | |
| model_search | 1.97 | 0.20 | 1.11 | |
| multiGenePlots | 2.35 | 0.31 | 1.79 | |
| regress_out | 0.22 | 0.00 | 0.15 | |
| run | 1.34 | 0.12 | 0.73 | |
| spatialDE | 1.44 | 0.18 | 0.89 | |
| spatialPatterns | 1.39 | 0.28 | 1.00 | |
| spatial_patterns | 12.74 | 0.39 | 6.56 | |
| stabilize | 0.17 | 0.04 | 0.11 | |