| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-27 12:06 -0400 (Thu, 27 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4420 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1743/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5client 1.28.0 (landing page) Vincent Carey
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the rhdf5client package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5client.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rhdf5client |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 rhdf5client |
| StartedAt: 2025-03-24 18:54:35 -0400 (Mon, 24 Mar 2025) |
| EndedAt: 2025-03-24 18:55:08 -0400 (Mon, 24 Mar 2025) |
| EllapsedTime: 33.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 rhdf5client
###
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* checking for file ‘rhdf5client/DESCRIPTION’ ... OK
* preparing ‘rhdf5client’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘delayed-array.Rmd’ using rmarkdown
Quitting from delayed-array.Rmd:32-38 [lkdela3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [hsdsdev.bioconductor.org]: SSL connection timeout
---
Backtrace:
▆
1. ├─rhdf5client::check_hsds()
2. │ └─httr::GET(tst)
3. │ └─httr:::request_perform(req, hu$handle$handle)
4. │ ├─httr:::request_fetch(req$output, req$url, handle)
5. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
6. │ └─curl::curl_fetch_memory(url, handle = handle)
7. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'delayed-array.Rmd' failed with diagnostics:
Timeout was reached [hsdsdev.bioconductor.org]: SSL connection timeout
--- failed re-building ‘delayed-array.Rmd’
SUMMARY: processing the following file failed:
‘delayed-array.Rmd’
Error: Vignette re-building failed.
Execution halted