Christian Panse
| Snapshot Date: 2025-03-20 13:00 -0400 (Thu, 20 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/rawDiag |
| git_branch: RELEASE_3_20 |
| git_last_commit: 93447f9 |
| git_last_commit_date: 2024-10-29 11:28:03 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-24 12:07 -0400 (Mon, 24 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4763 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4521 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4448 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4414 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1665/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rawDiag 1.2.0 (landing page) Christian Panse
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the rawDiag package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rawDiag.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rawDiag |
| Version: 1.2.0 |
| Command: chmod a+r rawDiag -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rawDiag |
| StartedAt: 2025-03-20 21:18:45 -0400 (Thu, 20 Mar 2025) |
| EndedAt: 2025-03-20 21:19:25 -0400 (Thu, 20 Mar 2025) |
| EllapsedTime: 39.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### chmod a+r rawDiag -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rawDiag
###
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* checking for file 'rawDiag/DESCRIPTION' ... OK
* preparing 'rawDiag':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'rawDiag.Rmd' using rmarkdown
trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.BackgroundSubtraction.dll'
Content type 'application/octet-stream' length 44544 bytes (43 KB)
==================================================
downloaded 43 KB
trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.Data.dll'
Content type 'application/octet-stream' length 406016 bytes (396 KB)
==================================================
downloaded 396 KB
trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.MassPrecisionEstimator.dll'
Content type 'application/octet-stream' length 11264 bytes (11 KB)
==================================================
downloaded 11 KB
trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.RawFileReader.dll'
Content type 'application/octet-stream' length 654336 bytes (639 KB)
==================================================
downloaded 639 KB
trying URL 'https://github.com/fgcz/rawrr/releases/download/1.9.2/rawrr.1.9.2.exe'
Content type 'application/octet-stream' length 28672 bytes (28 KB)
==================================================
downloaded 28 KB
Quitting from rawDiag.Rmd:265-270 [readEH4547OrbitrapTrailerTable]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'Reduce': 'CreateProcess' failed to run 'C:\Users\BIOCBU~1\AppData\Local\R\cache\R\rawrr\RAWRRA~1\rawrr.exe'
---
Backtrace:
▆
1. ├─BiocGenerics::Reduce(...)
2. ├─BiocGenerics::lapply(rawfile, FUN = rawDiag::readRaw)
3. ├─base::lapply(rawfile, FUN = rawDiag::readRaw)
4. │ └─rawDiag (local) FUN(X[[i]], ...)
5. │ └─rawrr::readChromatogram(rawfile, type = "tic")
6. │ └─rawrr:::.isAssemblyWorking()
7. │ └─base::system2(exe, stdout = TRUE)
8. └─base::.handleSimpleError(...)
9. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rawDiag.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'Reduce': 'CreateProcess' failed to run 'C:\Users\BIOCBU~1\AppData\Local\R\cache\R\rawrr\RAWRRA~1\rawrr.exe'
--- failed re-building 'rawDiag.Rmd'
SUMMARY: processing the following file failed:
'rawDiag.Rmd'
Error: Vignette re-building failed.
Execution halted