Davide Risso
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/mbkmeans |
| git_branch: RELEASE_3_20 |
| git_last_commit: 89ebb4a |
| git_last_commit_date: 2024-10-29 10:36:12 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:07 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1171/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mbkmeans 1.22.0 (landing page) Davide Risso
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the mbkmeans package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: mbkmeans |
| Version: 1.22.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL mbkmeans |
| StartedAt: 2024-11-19 20:51:53 -0000 (Tue, 19 Nov 2024) |
| EndedAt: 2024-11-19 20:53:15 -0000 (Tue, 19 Nov 2024) |
| EllapsedTime: 81.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL mbkmeans
###
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* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘mbkmeans’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Rhdf5lib/include' -I'/home/biocbuild/R/R-4.4.1/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Rhdf5lib/include' -I'/home/biocbuild/R/R-4.4.1/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include' -I/usr/local/include -fPIC -g -O2 -Wall -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
862 | bool status;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1592:65: required from here
1592 | model_inner = GMM_arma_covariance_type<arma::gmm_full>(model_inner,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
1593 | data,
| ~~~~~
1594 | gaussian_comps,
| ~~~~~~~~~~~~~~~
1595 | dist_mode,
| ~~~~~~~~~~
1596 | seed_mode,
| ~~~~~~~~~~
1597 | km_iter,
| ~~~~~~~~
1598 | em_iter,
| ~~~~~~~~
1599 | verbose,
| ~~~~~~~~
1600 | var_floor,
| ~~~~~~~~~~
1601 | seed);
| ~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
1530 | bool status;
| ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1626:65: required from here
1626 | model_inner = GMM_arma_covariance_type<arma::gmm_diag>(model_inner,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
1627 | data,
| ~~~~~
1628 | gaussian_comps,
| ~~~~~~~~~~~~~~~
1629 | dist_mode,
| ~~~~~~~~~~
1630 | seed_mode,
| ~~~~~~~~~~
1631 | km_iter,
| ~~~~~~~~
1632 | em_iter,
| ~~~~~~~~
1633 | verbose,
| ~~~~~~~~
1634 | var_floor,
| ~~~~~~~~~~
1635 | seed);
| ~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
1530 | bool status;
| ^~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-mbkmeans/00new/mbkmeans/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)