Multiple platform build/check report for BioC 3.20 - BUILD results for ggbio on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4679
palomino4	Windows Server 2022 Datacenter	x64	4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"	4414
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4441
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4394
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ggbio on palomino4

To the developers/maintainers of the ggbio package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggbio.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ggbio

Version: 1.53.0

Command: chmod a+r ggbio -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ggbio

StartedAt: 2024-06-09 19:17:51 -0400 (Sun, 09 Jun 2024)

EndedAt: 2024-06-09 19:25:25 -0400 (Sun, 09 Jun 2024)

EllapsedTime: 454.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r ggbio -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ggbio
###
##############################################################################
##############################################################################


* checking for file 'ggbio/DESCRIPTION' ... OK
* preparing 'ggbio':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'ggbio.Rnw' using Sweave
--- finished re-building 'ggbio.Rnw'

cp realvignettes/*.Rnw .
F:/biocbuild/bbs-3.20-bioc/R/bin/Rscript -e "library(knitr); knit2pdf('ggbio.Rnw')"


processing file: ggbio.Rnw
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output file: ggbio.tex

! Package xcolor Error: Undefined color `fgcolor'.

! pdflatex: major issue: User/administrator updates are out-of-sync.

Error: LaTeX failed to compile ggbio.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See ggbio.log for more info.
Execution halted
make: *** [Makefile:15: ggbio.pdf] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted