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This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4441
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 93/2239HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
arrayQualityMetrics 3.61.0  (landing page)
Mike Smith
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/arrayQualityMetrics
git_branch: devel
git_last_commit: 00bb3ba
git_last_commit_date: 2024-04-30 10:17:13 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for arrayQualityMetrics on palomino4

To the developers/maintainers of the arrayQualityMetrics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/arrayQualityMetrics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: arrayQualityMetrics
Version: 3.61.0
Command: chmod a+r arrayQualityMetrics -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data arrayQualityMetrics
StartedAt: 2024-06-09 17:13:58 -0400 (Sun, 09 Jun 2024)
EndedAt: 2024-06-09 17:23:57 -0400 (Sun, 09 Jun 2024)
EllapsedTime: 599.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r arrayQualityMetrics -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data arrayQualityMetrics
###
##############################################################################
##############################################################################


* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* preparing 'arrayQualityMetrics':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'aqm.Rnw' using knitr
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "aqm.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'aqm.Rnw' failed with diagnostics:
running 'texi2dvi' on 'aqm.tex' failed

LaTeX errors:
ics/vignettes/aqm.tex:74: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:94: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:115: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:126: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:154: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:226: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              

--- failed re-building 'aqm.Rnw'

--- re-building 'arrayQualityMetrics.Rnw' using knitr
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "arrayQualityMetrics.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'arrayQualityMetrics.Rnw' failed with diagnostics:
running 'texi2dvi' on 'arrayQualityMetrics.tex' failed

LaTeX errors:
ics/vignettes/arrayQualityMetrics.tex:152: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:167: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:199: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:209: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:262: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:307: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:315: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:355: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:380: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:416: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:449: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:463: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'arrayQualityMetrics.Rnw'

SUMMARY: processing the following files failed:
  'aqm.Rnw' 'arrayQualityMetrics.Rnw'

Error: Vignette re-building failed.
Execution halted