Back to Multiple platform build/check report for BioC 3.20:   simplified   long
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-01-09 12:10 -0500 (Thu, 09 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
taishanLinux (openEuler 24.03 LTS)aarch644.4.2 (2024-10-31) -- "Pile of Leaves" 4358
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 62/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
amplican 1.28.0  (landing page)
Eivind Valen
Snapshot Date: 2025-01-02 13:00 -0500 (Thu, 02 Jan 2025)
git_url: https://git.bioconductor.org/packages/amplican
git_branch: RELEASE_3_20
git_last_commit: 67f2ecd
git_last_commit_date: 2024-10-29 10:22:13 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for amplican on taishan

To the developers/maintainers of the amplican package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/amplican.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: amplican
Version: 1.28.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data amplican
StartedAt: 2025-01-08 21:10:37 -0000 (Wed, 08 Jan 2025)
EndedAt: 2025-01-08 21:11:07 -0000 (Wed, 08 Jan 2025)
EllapsedTime: 30.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data amplican
###
##############################################################################
##############################################################################


* checking for file ‘amplican/DESCRIPTION’ ... OK
* preparing ‘amplican’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘amplicanFAQ.Rmd’ using rmarkdown
Error: processing vignette 'amplicanFAQ.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘amplicanFAQ.Rmd’

--- re-building ‘amplicanOverview.Rmd’ using rmarkdown
Error: processing vignette 'amplicanOverview.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘amplicanOverview.Rmd’

--- re-building ‘example_amplicon_report.Rmd’ using rmarkdown
Error: processing vignette 'example_amplicon_report.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘example_amplicon_report.Rmd’

--- re-building ‘example_barcode_report.Rmd’ using rmarkdown
Error: processing vignette 'example_barcode_report.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘example_barcode_report.Rmd’

--- re-building ‘example_group_report.Rmd’ using rmarkdown
Error: processing vignette 'example_group_report.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘example_group_report.Rmd’

--- re-building ‘example_guide_report.Rmd’ using rmarkdown
Error: processing vignette 'example_guide_report.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘example_guide_report.Rmd’

--- re-building ‘example_id_report.Rmd’ using rmarkdown
Error: processing vignette 'example_id_report.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘example_id_report.Rmd’

--- re-building ‘example_index.Rmd’ using rmarkdown
Error: processing vignette 'example_index.Rmd' failed with diagnostics:
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
--- failed re-building ‘example_index.Rmd’

SUMMARY: processing the following files failed:
  ‘amplicanFAQ.Rmd’ ‘amplicanOverview.Rmd’
  ‘example_amplicon_report.Rmd’ ‘example_barcode_report.Rmd’
  ‘example_group_report.Rmd’ ‘example_guide_report.Rmd’
  ‘example_id_report.Rmd’ ‘example_index.Rmd’

Error: Vignette re-building failed.
Execution halted