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This page was generated on 2025-03-24 12:09 -0400 (Mon, 24 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4763
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4494
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4521
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4448
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4414
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2220/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UCSC.utils 1.2.0  (landing page)
Hervé Pagès
Snapshot Date: 2025-03-20 13:00 -0400 (Thu, 20 Mar 2025)
git_url: https://git.bioconductor.org/packages/UCSC.utils
git_branch: RELEASE_3_20
git_last_commit: d77d73e
git_last_commit_date: 2024-10-29 11:29:35 -0400 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for UCSC.utils on merida1

To the developers/maintainers of the UCSC.utils package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UCSC.utils.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: UCSC.utils
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils
StartedAt: 2025-03-20 22:49:17 -0400 (Thu, 20 Mar 2025)
EndedAt: 2025-03-20 22:49:33 -0400 (Thu, 20 Mar 2025)
EllapsedTime: 16.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCSC.utils
###
##############################################################################
##############################################################################


* checking for file ‘UCSC.utils/DESCRIPTION’ ... OK
* preparing ‘UCSC.utils’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UCSC.utils.Rmd’ using rmarkdown

Quitting from UCSC.utils.Rmd:75-78 [fetch_UCSC_track_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.check_response_status()`:
! [HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or
  https://api.genome.ucsc.edu is down?)
---
Backtrace:
    ▆
 1. └─UCSC.utils::fetch_UCSC_track_data("mm9", "cytoBandIdeo")
 2.   └─UCSC.utils:::API_get_track_data(genome, primary_table, api.url = api.url)
 3.     └─UCSC.utils:::.query_API(...)
 4.       └─UCSC.utils:::.check_response_status(response, fallback_errmsg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'UCSC.utils.Rmd' failed with diagnostics:
[HTTP 500] mm9/cytoBandIdeo: unknown UCSC genome/primary_table (or
  https://api.genome.ucsc.edu is down?)
--- failed re-building ‘UCSC.utils.Rmd’

SUMMARY: processing the following file failed:
  ‘UCSC.utils.Rmd’

Error: Vignette re-building failed.
Execution halted