| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-23 12:11 -0500 (Thu, 23 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4493 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 123/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BadRegionFinder 1.34.0 (landing page) Sarah Sandmann
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the BadRegionFinder package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BadRegionFinder.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: BadRegionFinder |
| Version: 1.34.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder |
| StartedAt: 2025-01-20 21:52:02 -0000 (Mon, 20 Jan 2025) |
| EndedAt: 2025-01-20 21:53:19 -0000 (Mon, 20 Jan 2025) |
| EllapsedTime: 77.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder ### ############################################################################## ############################################################################## * checking for file ‘BadRegionFinder/DESCRIPTION’ ... OK * preparing ‘BadRegionFinder’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘BadRegionFinder.Rnw’ using Sweave Determine Coverage Sample Test2_454 Sample Test2_ion Determine target bases Combine Information Chromosome: 1 Chromosome: 2 Chromosome: 3 Chromosome: 4 Chromosome: 5 Chromosome: 6 Chromosome: 7 Chromosome: 8 Chromosome: 9 Chromosome: 10 Chromosome: 11 Chromosome: 12 Chromosome: 13 Chromosome: 14 Chromosome: 15 Chromosome: 16 Chromosome: 17 Chromosome: 18 Chromosome: 19 Chromosome: 20 Chromosome: 21 Chromosome: 22 Chromosome: X Chromosome: Y Chromosome: MT Analyzing Chromosome 1 Analyzing Chromosome 2 Analyzing Chromosome 3 Analyzing Chromosome 4 Analyzing Chromosome 5 Analyzing Chromosome 6 Analyzing Chromosome 7 Analyzing Chromosome 8 Analyzing Chromosome 9 Analyzing Chromosome 10 Analyzing Chromosome 11 Analyzing Chromosome 12 Analyzing Chromosome 13 Analyzing Chromosome 14 Analyzing Chromosome 15 Analyzing Chromosome 16 Analyzing Chromosome 17 Analyzing Chromosome 18 Analyzing Chromosome 19 Analyzing Chromosome 20 Analyzing Chromosome 21 Analyzing Chromosome 22 Analyzing Chromosome 23 Analyzing Chromosome 24 Analyzing Chromosome 25 Analyze Chromosome 1 Analyze Chromosome 2 Analyze Chromosome 3 Analyze Chromosome 4 Analyze Chromosome 5 Analyze Chromosome 6 Analyze Chromosome 7 Analyze Chromosome 8 Analyze Chromosome 9 Analyze Chromosome 10 Analyze Chromosome 11 Analyze Chromosome 12 Analyze Chromosome 13 Analyze Chromosome 14 Analyze Chromosome 15 Analyze Chromosome 16 Analyze Chromosome 17 Analyze Chromosome 18 Analyze Chromosome 19 Analyze Chromosome 20 Analyze Chromosome 21 Analyze Chromosome 22 Analyze Chromosome 23 Analyze Chromosome 24 Analyze Chromosome 25 Error: processing vignette 'BadRegionFinder.Rnw' failed with diagnostics: chunk 10 (label = 10) Error in curl::curl_parse_url(url, baseurl = base_url, decode = FALSE) : Failed to parse URL: Bad scheme --- failed re-building ‘BadRegionFinder.Rnw’ SUMMARY: processing the following file failed: ‘BadRegionFinder.Rnw’ Error: Vignette re-building failed. Execution halted