BioC experimental data: CHECK report for GSBenchMark on linux1.bioconductor.org

Package: GSBenchMark

Version: 0.104.0

Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings GSBenchMark_0.104.0.tar.gz

StartedAt: 2015-10-24 14:55:45 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 14:56:06 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 21.5 seconds

RetCode: 0

Status:  OK

CheckDir: GSBenchMark.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings GSBenchMark_0.104.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/GSBenchMark.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘0.104.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.

* installing *source* package ‘GSBenchMark’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSBenchMark)

name	user	system	elapsed
GSBenchMarkDatasets	0.387	0.016	0.403
bipolar_GDS2190	0.346	0.012	0.358
breast_GDS807	0.346	0.000	0.346
diracpathways	0.016	0.003	0.020
exprsdata	0.528	0.008	0.536
leukemia_GSEA	0.336	0.004	0.340
logexprsdata	0.376	0.004	0.380
marfan_GDS2960	0.169	0.000	0.170
melanoma_GDS2735	0.481	0.004	0.485
parkinsons_GDS2519	0.747	0.012	0.759
phenotypes	0.515	0.019	0.536
prostate_GDS2545_m_nf	0.286	0.008	0.295
prostate_GDS2545_m_p	0.527	0.012	0.540
prostate_GDS2545_p_nf	0.495	0.000	0.495
sarcoma_data	0.788	0.020	0.809
squamous_GDS2520	0.193	0.008	0.201