rama 1.44.0
Raphael Gottardo
| Snapshot Date: 2015-11-09 16:24:09 -0800 (Mon, 09 Nov 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/rama | | Last Changed Rev: 109589 / Revision: 110496 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | [ OK ] | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf rama.buildbin-libdir && mkdir rama.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rama_1.44.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R rama.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rama.buildbin-libdir rama_1.44.0.tar.gz'
>>>>>>>
* installing *source* package ‘rama’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function ‘mcmc_shift’:
estimation_slice.c:122: warning: unused variable ‘SSeps_sd_new’
estimation_slice.c:121: warning: unused variable ‘SSeps_sd’
estimation_slice.c:117: warning: unused variable ‘pi’
estimation_slice.c:116: warning: unused variable ‘SS12’
estimation_slice.c:116: warning: unused variable ‘SSR2’
estimation_slice.c:116: warning: unused variable ‘SSR1’
estimation_slice.c:115: warning: unused variable ‘dens_epsilon_new’
estimation_slice.c:115: warning: unused variable ‘dens_epsilon’
estimation_slice.c:114: warning: unused variable ‘l_epsilon_new’
estimation_slice.c:114: warning: unused variable ‘l_epsilon’
estimation_slice.c:113: warning: unused variable ‘lambda_eps2_new’
estimation_slice.c:113: warning: unused variable ‘lambda_eps1_new’
estimation_slice.c: In function ‘slice_sampling_lambda_eps’:
estimation_slice.c:484: warning: suggest parentheses around comparison in operand of &
estimation_slice.c:493: warning: suggest parentheses around comparison in operand of &
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function ‘mcmc’:
ex_estimation_slice.c:144: warning: unused variable ‘old_a’
ex_estimation_slice.c:143: warning: unused variable ‘old_b’
ex_estimation_slice.c:138: warning: unused variable ‘sum_res2’
ex_estimation_slice.c:137: warning: unused variable ‘sum_res1’
ex_estimation_slice.c:119: warning: unused variable ‘dens_t_new’
ex_estimation_slice.c:119: warning: unused variable ‘dens_t’
ex_estimation_slice.c:112: warning: unused variable ‘pi’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c mean.sd.c -o mean.sd.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c reorder.c -o reorder.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c util.c -o util.o
util.c: In function ‘product_mat_vec’:
util.c:574: warning: unused variable ‘k’
util.c: In function ‘slice_sampling_a’:
util.c:629: warning: suggest parentheses around comparison in operand of |
util.c:629: warning: suggest parentheses around comparison in operand of &
util.c:636: warning: suggest parentheses around comparison in operand of &
util.c:643: warning: suggest parentheses around comparison in operand of &
util.c:613: warning: unused variable ‘v’
util.c: In function ‘slice_sampling_b’:
util.c:703: warning: suggest parentheses around comparison in operand of |
util.c:703: warning: suggest parentheses around comparison in operand of &
util.c:710: warning: suggest parentheses around comparison in operand of &
util.c:717: warning: suggest parentheses around comparison in operand of &
util.c:686: warning: unused variable ‘v’
util.c: In function ‘slice_sampling_b2’:
util.c:767: warning: suggest parentheses around comparison in operand of &
util.c:775: warning: suggest parentheses around comparison in operand of &
util.c: In function ‘slice_sampling_a2’:
util.c:822: warning: suggest parentheses around comparison in operand of &
util.c:830: warning: suggest parentheses around comparison in operand of &
util.c: In function ‘slice_sampling_rho’:
util.c:876: warning: suggest parentheses around comparison in operand of |
util.c:876: warning: suggest parentheses around comparison in operand of &
util.c:883: warning: suggest parentheses around comparison in operand of &
util.c:890: warning: suggest parentheses around comparison in operand of &
util.c:860: warning: unused variable ‘v’
util.c: In function ‘slice_sampling_rho2’:
util.c:935: warning: suggest parentheses around comparison in operand of &
util.c:944: warning: suggest parentheses around comparison in operand of &
util.c: In function ‘slice_sampling_shift’:
util.c:1019: warning: suggest parentheses around comparison in operand of |
util.c:1019: warning: suggest parentheses around comparison in operand of &
util.c:1026: warning: suggest parentheses around comparison in operand of &
util.c:1033: warning: suggest parentheses around comparison in operand of &
util.c:1000: warning: unused variable ‘v’
util.c: In function ‘slice_sampling_shift2’:
util.c:1100: warning: suggest parentheses around comparison in operand of &
util.c:1108: warning: suggest parentheses around comparison in operand of &
util.c:1082: warning: unused variable ‘v’
util.c: In function ‘slice_sampling_p’:
util.c:1248: warning: suggest parentheses around comparison in operand of &
util.c:1256: warning: suggest parentheses around comparison in operand of &
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o rama.so estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/rama.buildbin-libdir/rama/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rama)
>>>>>>>
>>>>>>> FIXING LINKS FOR rama.buildbin-libdir/rama/libs//rama.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "rama.buildbin-libdir/rama/libs//rama.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "rama.buildbin-libdir/rama/libs//rama.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "rama.buildbin-libdir/rama/libs//rama.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "rama.buildbin-libdir/rama/libs//rama.so"