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BioC 3.2: BUILD report for paxtoolsr on zin1

This page was generated on 2016-04-23 10:14:13 -0700 (Sat, 23 Apr 2016).

Package 756/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
paxtoolsr 1.4.6
Augustin Luna
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/paxtoolsr
Last Changed Rev: 113980 / Revision: 116712
Last Changed Date: 2016-02-24 04:22:01 -0800 (Wed, 24 Feb 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded [ ERROR ] skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: paxtoolsr
Version: 1.4.6
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
StartedAt: 2016-04-22 20:51:10 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 20:51:29 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 19.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data paxtoolsr
###
##############################################################################
##############################################################################


* checking for file ‘paxtoolsr/DESCRIPTION’ ... OK
* preparing ‘paxtoolsr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: rJava
Loading required package: XML
2016-04-22 20:51:18,281 1990 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2016-04-22 20:51:18,397 2106 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)
Quitting from lines 164-166 (using_paxtoolsr.Rmd) 
Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
ERROR: Code: 500 Message: Internal Server Error (PC Webservice Error)
Execution halted