mmnet 1.8.1
Yang Cao , Fei Li
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/mmnet | | Last Changed Rev: 113114 / Revision: 116712 | | Last Changed Date: 2016-01-30 20:27:26 -0800 (Sat, 30 Jan 2016) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf mmnet.buildbin-libdir mmnet.Rcheck && mkdir mmnet.buildbin-libdir mmnet.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mmnet.buildbin-libdir mmnet_1.8.1.tar.gz >mmnet.Rcheck\00install.out 2>&1 && cp mmnet.Rcheck\00install.out mmnet-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=mmnet.buildbin-libdir --install="check:mmnet-install.out" --force-multiarch --no-vignettes --timings mmnet_1.8.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/mmnet.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mmnet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mmnet' version '1.8.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mmnet' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 2.2Mb
doc 3.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
constructMetabolicNetwork: no visible binding for global variable
'RefDbcache'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [191s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
showMetagenomicNet 76.96 0.50 78.14
topologicalAnalyzeNet 47.31 0.11 47.44
constructSSN 28.46 0.05 28.90
estimateAbundance 25.86 0.03 25.90
** running examples for arch 'x64' ... [232s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
showMetagenomicNet 85.80 0.66 87.66
topologicalAnalyzeNet 46.13 0.36 46.66
constructSSN 44.10 0.12 44.23
estimateAbundance 39.61 0.08 39.68
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbld/bbs-3.2-bioc/meat/mmnet.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'mmnet' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'mmnet' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mmnet' as mmnet_1.8.1.zip
* DONE (mmnet)