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BioC 3.2: INSTALL report for methylPipe on moscato1

This page was generated on 2016-04-23 10:20:37 -0700 (Sat, 23 Apr 2016).

Package 635/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylPipe 1.4.5
Kamal Kishore
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/methylPipe
Last Changed Rev: 114854 / Revision: 116712
Last Changed Date: 2016-03-16 08:50:48 -0700 (Wed, 16 Mar 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: methylPipe
Version: 1.4.5
Command: rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/methylPipe_1.4.5.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=methylPipe.buildbin-libdir --merge-multiarch methylPipe_1.4.5.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL methylPipe_1.4.5.zip && rm methylPipe_1.4.5.tar.gz methylPipe_1.4.5.zip
StartedAt: 2016-04-22 18:42:43 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 18:44:57 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 134.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf methylPipe.buildbin-libdir && mkdir methylPipe.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/methylPipe_1.4.5.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=methylPipe.buildbin-libdir --merge-multiarch methylPipe_1.4.5.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL methylPipe_1.4.5.zip  && rm methylPipe_1.4.5.tar.gz methylPipe_1.4.5.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  3  390k    3 14358    0     0   384k      0  0:00:01 --:--:--  0:00:01  424k
100  390k  100  390k    0     0  9748k      0 --:--:-- --:--:-- --:--:-- 10.5M

install for i386

* installing *source* package 'methylPipe' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_methylPipe.c -o R_init_methylPipe.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c binning.c -o binning.o
gcc -m32 -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs/i386
** R
** exec
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'methylPipe' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_methylPipe.c -o R_init_methylPipe.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c binning.c -o binning.o
gcc -m64 -shared -s -static-libgcc -o methylPipe.dll tmp.def R_init_methylPipe.o binning.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/methylPipe.buildbin-libdir/methylPipe/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylPipe' as methylPipe_1.4.5.zip
* DONE (methylPipe)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'methylPipe' successfully unpacked and MD5 sums checked