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BioC 3.2: BUILD BIN report for methylMnM on oaxaca

This page was generated on 2016-04-23 10:27:11 -0700 (Sat, 23 Apr 2016).

Package 634/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylMnM 1.8.0
Yan Zhou
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/methylMnM
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: methylMnM
Version: 1.8.0
Command: rm -rf methylMnM.buildbin-libdir && mkdir methylMnM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh methylMnM_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R methylMnM.buildbin-libdir
StartedAt: 2016-04-23 05:51:19 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:51:32 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 13.0 seconds
RetCode: 0
Status:  OK 
PackageFile: methylMnM_1.8.0.tgz
PackageFileSize: 8.729 MiB

Command output

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###
### Running command:
###
###   rm -rf methylMnM.buildbin-libdir && mkdir methylMnM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh methylMnM_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R methylMnM.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=methylMnM.buildbin-libdir methylMnM_1.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘methylMnM’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c CpGcount.c -o CpGcount.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c calculatecount.c -o calculatecount.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c calculatecount1.c -o calculatecount1.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c calculatecountneg.c -o calculatecountneg.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c pmultinom.c -o pmultinom.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c pvalueclassify.c -o pvalueclassify.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c register.c -o register.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o methylMnM.so CpGcount.o calculatecount.o calculatecount1.o calculatecountneg.o pmultinom.o pvalueclassify.o register.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/methylMnM.buildbin-libdir/methylMnM/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (methylMnM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR methylMnM.buildbin-libdir/methylMnM/libs//methylMnM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "methylMnM.buildbin-libdir/methylMnM/libs//methylMnM.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "methylMnM.buildbin-libdir/methylMnM/libs//methylMnM.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "methylMnM.buildbin-libdir/methylMnM/libs//methylMnM.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "methylMnM.buildbin-libdir/methylMnM/libs//methylMnM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "methylMnM.buildbin-libdir/methylMnM/libs//methylMnM.so"