Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K [L] M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.2: INSTALL report for limma on moscato1

This page was generated on 2016-04-23 10:15:16 -0700 (Sat, 23 Apr 2016).

Package 564/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
limma 3.26.9
Gordon Smyth
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/limma
Last Changed Rev: 115092 / Revision: 116712
Last Changed Date: 2016-03-21 22:01:17 -0700 (Mon, 21 Mar 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: limma
Version: 3.26.9
Command: rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/limma_3.26.9.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=limma.buildbin-libdir --merge-multiarch limma_3.26.9.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL limma_3.26.9.zip && rm limma_3.26.9.tar.gz limma_3.26.9.zip
StartedAt: 2016-04-22 17:39:15 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:41:38 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 143.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/limma_3.26.9.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=limma.buildbin-libdir --merge-multiarch limma_3.26.9.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL limma_3.26.9.zip  && rm limma_3.26.9.tar.gz limma_3.26.9.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1383k  100 1383k    0     0  78.1M      0 --:--:-- --:--:-- --:--:--  103M

install for i386

* installing *source* package 'limma' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c normexp.c -o normexp.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c weighted_lowess.c -o weighted_lowess.o
gcc -m32 -shared -s -static-libgcc -o limma.dll tmp.def normexp.o weighted_lowess.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/limma.buildbin-libdir/limma/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'intro.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'limma' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c normexp.c -o normexp.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c weighted_lowess.c -o weighted_lowess.o
gcc -m64 -shared -s -static-libgcc -o limma.dll tmp.def normexp.o weighted_lowess.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/limma.buildbin-libdir/limma/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'limma' as limma_3.26.9.zip
* DONE (limma)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'limma' successfully unpacked and MD5 sums checked