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BioC 3.2: BUILD BIN report for impute on oaxaca

This page was generated on 2016-04-23 10:22:48 -0700 (Sat, 23 Apr 2016).

Package 527/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
impute 1.44.0
Balasubramanian Narasimhan
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/impute
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: impute
Version: 1.44.0
Command: rm -rf impute.buildbin-libdir && mkdir impute.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh impute_1.44.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R impute.buildbin-libdir
StartedAt: 2016-04-23 05:48:08 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:48:09 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 1.9 seconds
RetCode: 0
Status:  OK 
PackageFile: impute_1.44.0.tgz
PackageFileSize: 637.6 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf impute.buildbin-libdir && mkdir impute.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh impute_1.44.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R impute.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=impute.buildbin-libdir impute_1.44.0.tar.gz'
>>>>>>> 

* installing *source* package ‘impute’ ...
** libs
gfortran-4.8   -fPIC  -g -O2 -Wall  -c knnimpute.f -o knnimpute.o
Warning: Nonconforming tab character in column 1 of line 89
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knnimpute.f: In function ‘twomis’:
knnimpute.f:168:0: warning: ‘dold’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       ratio=dabs(dnew-dold)/dold
 ^
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o impute.so knnimpute.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/impute.buildbin-libdir/impute/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (impute)


>>>>>>> 
>>>>>>> FIXING LINKS FOR impute.buildbin-libdir/impute/libs//impute.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "impute.buildbin-libdir/impute/libs//impute.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "impute.buildbin-libdir/impute/libs//impute.so"